Back to the "Multiple platform build/check report"
| Package 184/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
sigPathway1.3.0Weil Lai | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 10.1) | x86_64 | OK | OK | ||
| Linux (SUSE 9.2) | i686 | OK | OK | ||
| Solaris 2.9 | sparc | OK | [ OK ] | ||
| Windows Server 2003 | x86_64 | OK | OK | OK | |
| Windows Server 2003 | NA | OK | ERROR | OK | |
| Mac OS X (10.4.6) | i686 | OK | OK |
| Package: sigPathway |
| Version: 1.3.0 |
| Command: /loc/biocbuild/2.0d/R/bin/R CMD check sigPathway_1.3.0.tar.gz |
| RetCode: 0 |
| Time: 151.3 seconds |
| Status: OK |
| CheckDir: sigPathway.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/loc/biocbuild/2.0d/Rpacks/sigPathway.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-12-05 r40126) * checking for file 'sigPathway/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'sigPathway' version '1.3.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'sigPathway' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating sigPathway-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating sigPathway-manual.tex ... OK * checking sigPathway-manual.tex ... OK
sigPathway.Rcheck/00install.out:
* Installing *source* package 'sigPathway' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c calc_gene_set_internal.c -o calc_gene_set_internal.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c calc_gene_set_stat.c -o calc_gene_set_stat.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c calc_probe_stat.c -o calc_probe_stat.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c calc_weights.c -o calc_weights.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c matrix_fn.c -o matrix_fn.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c permute.c -o permute.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c shuffle.c -o shuffle.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include -I/usr/local/include -fPIC -g -O2 -Wall -c sigPathway.c -o sigPathway.o
gcc -std=gnu99 -G -L/usr/local/lib -o sigPathway.so calc_gene_set_internal.o calc_gene_set_stat.o calc_probe_stat.o calc_weights.o matrix_fn.o permute.o shuffle.o sigPathway.o -L/loc/biocbuild/2.0d/R/lib -lRlapack -L/loc/biocbuild/2.0d/R/lib -lRblas -lgfortran -lm -lgcc_s
** R
** data
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'sigPathway'
Formats: text html latex example
MuscleExample text html latex
calcTNullFast text html latex
calcTStatFast text html latex example
calculate.GSEA text html latex
calculate.NGSk text html latex example
calculatePathwayStatistics text html latex example
estimateNumPerm text html latex example
getPathwayStatistics.NGSk text html latex
getPathwayStatistics text html latex
rankPathways.NGSk text html latex
rankPathways text html latex
runSigPathway text html latex example
selectGeneSets text html latex
writeSigPathway text html latex
** building package indices ...
* DONE (sigPathway)