Back to the "Multiple platform build/check report"
| Package 51/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
DNAcopy1.9.1E. S. Venkatraman | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 10.1) | x86_64 | OK | OK | ||
| Linux (SUSE 9.2) | i686 | OK | OK | ||
| Solaris 2.9 | sparc | OK | OK | ||
| Windows Server 2003 | x86_64 | OK | OK | OK | |
| Windows Server 2003 | NA | ERROR | skipped | skipped | |
| Mac OS X (10.4.6) | i686 | OK | [ OK ] |
| Package: DNAcopy |
| Version: 1.9.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check DNAcopy_1.9.1.tar.gz |
| RetCode: 0 |
| Time: 52.3 seconds |
| Status: OK |
| CheckDir: DNAcopy.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/2.0d/Rpacks/DNAcopy.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-10-21 r39702) * checking for file 'DNAcopy/DESCRIPTION' ... OK * this is package 'DNAcopy' version '1.9.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'DNAcopy' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating DNAcopy-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating DNAcopy-manual.tex ... OK * checking DNAcopy-manual.tex ... OK
DNAcopy.Rcheck/00install.out:
* Installing *source* package 'DNAcopy' ...
** libs
** arch - i386
gfortran-4.0 -arch i386 -fPIC -g -O2 -march=pentium-m -mtune=prescott -c changepoints.f -o changepoints.o
/var/tmp//ccVyMzhb.s:1878:indirect jmp without `*'
/var/tmp//ccVyMzhb.s:1893:indirect jmp without `*'
/var/tmp//ccVyMzhb.s:1908:indirect jmp without `*'
/var/tmp//ccVyMzhb.s:1923:indirect jmp without `*'
/var/tmp//ccVyMzhb.s:1938:indirect jmp without `*'
/var/tmp//ccVyMzhb.s:1953:indirect jmp without `*'
/var/tmp//ccVyMzhb.s:1968:indirect jmp without `*'
/var/tmp//ccVyMzhb.s:1983:indirect jmp without `*'
/var/tmp//ccVyMzhb.s:1998:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c flchoose.c -o flchoose.o
/var/tmp//ccHKTNl0.s:38:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c fphyper.c -o fphyper.o
/var/tmp//ccVQmU58.s:50:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c fpnorm.c -o fpnorm.o
/var/tmp//cc4pePDd.s:54:indirect jmp without `*'
gfortran-4.0 -arch i386 -fPIC -g -O2 -march=pentium-m -mtune=prescott -c getbdry.f -o getbdry.o
/var/tmp//ccDUGGut.s:779:indirect jmp without `*'
/var/tmp//ccDUGGut.s:794:indirect jmp without `*'
/var/tmp//ccDUGGut.s:809:indirect jmp without `*'
/var/tmp//ccDUGGut.s:824:indirect jmp without `*'
/var/tmp//ccDUGGut.s:839:indirect jmp without `*'
/var/tmp//ccDUGGut.s:854:indirect jmp without `*'
gfortran-4.0 -arch i386 -fPIC -g -O2 -march=pentium-m -mtune=prescott -c hybcpt.f -o hybcpt.o
/var/tmp//ccHuX4IL.s:925:indirect jmp without `*'
/var/tmp//ccHuX4IL.s:940:indirect jmp without `*'
/var/tmp//ccHuX4IL.s:955:indirect jmp without `*'
/var/tmp//ccHuX4IL.s:970:indirect jmp without `*'
/var/tmp//ccHuX4IL.s:985:indirect jmp without `*'
/var/tmp//ccHuX4IL.s:1000:indirect jmp without `*'
gfortran-4.0 -arch i386 -fPIC -g -O2 -march=pentium-m -mtune=prescott -c prune.f -o prune.o
/var/tmp//ccb0Me9g.s:842:indirect jmp without `*'
/var/tmp//ccb0Me9g.s:857:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c rshared.c -o rshared.o
/var/tmp//ccJzf80S.s:55:indirect jmp without `*'
/var/tmp//ccJzf80S.s:70:indirect jmp without `*'
/var/tmp//ccJzf80S.s:85:indirect jmp without `*'
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o -lgfortran -lgcc_s -lSystemStubs -lmx -lSystem -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gfortran-4.0 -arch ppc -fPIC -g -O2 -c changepoints.f -o changepoints.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c flchoose.c -o flchoose.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c fphyper.c -o fphyper.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c fpnorm.c -o fpnorm.o
gfortran-4.0 -arch ppc -fPIC -g -O2 -c getbdry.f -o getbdry.o
gfortran-4.0 -arch ppc -fPIC -g -O2 -c hybcpt.f -o hybcpt.o
gfortran-4.0 -arch ppc -fPIC -g -O2 -c prune.f -o prune.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c rshared.c -o rshared.o
gcc-4.0 -arch ppc -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o -lgfortran -lgcc_s -lSystemStubs -lmx -lSystem -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** moving datasets to lazyload DB
** demo
** inst
** help
>>> Building/Updating help pages for package 'DNAcopy'
Formats: text html latex example
CNA text html latex example
DNAcopy-internal text html latex
DNAcopy text html latex
coriell text html latex
cytoBand text html latex
getbdry text html latex
plot.DNAcopy text html latex example
segment text html latex example
smooth.CNA text html latex example
subset.CNA text html latex example
subset.DNAcopy text html latex
** building package indices ...
* DONE (DNAcopy)