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| Package 35/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
bridge1.7.0Raphael Gottardo | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 10.1) | x86_64 | OK | OK | ||
| Linux (SUSE 9.2) | i686 | OK | OK | ||
| Solaris 2.9 | sparc | OK | OK | ||
| Windows Server 2003 | x86_64 | OK | OK | OK | |
| Windows Server 2003 | NA | ERROR | skipped | skipped | |
| Mac OS X (10.4.6) | i686 | OK | [ OK ] |
| Package: bridge |
| Version: 1.7.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check bridge_1.7.0.tar.gz |
| RetCode: 0 |
| Time: 93.5 seconds |
| Status: OK |
| CheckDir: bridge.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/Users/biocbuild/2.0d/Rpacks/bridge.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-10-21 r39702) * checking for file 'bridge/DESCRIPTION' ... OK * this is package 'bridge' version '1.7.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'bridge' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating bridge-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating bridge-manual.tex ... OK * checking bridge-manual.tex ... OK
bridge.Rcheck/00install.out:
* Installing *source* package 'bridge' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c: In function 'up_date_w2':
bridge2.affy.c:300: warning: implicit declaration of function 'dirichlet'
/var/tmp//ccVKMTmN.s:2513:indirect jmp without `*'
/var/tmp//ccVKMTmN.s:2528:indirect jmp without `*'
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/var/tmp//ccVKMTmN.s:2648:indirect jmp without `*'
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/var/tmp//ccVKMTmN.s:2708:indirect jmp without `*'
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/var/tmp//ccVKMTmN.s:2738:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c bridge2.c -o bridge2.o
/var/tmp//ccLOEEKG.s:5242:indirect jmp without `*'
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/var/tmp//ccLOEEKG.s:5542:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c bridge2_util.c -o bridge2_util.o
bridge2_util.c: In function 'qr_solve':
bridge2_util.c:570: warning: implicit declaration of function 'dqrdc2_'
bridge2_util.c:585: warning: implicit declaration of function 'dqrcf_'
/var/tmp//ccyy0PTF.s:3765:indirect jmp without `*'
/var/tmp//ccyy0PTF.s:3780:indirect jmp without `*'
/var/tmp//ccyy0PTF.s:3795:indirect jmp without `*'
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/var/tmp//ccyy0PTF.s:4020:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c bridge3.c -o bridge3.o
/var/tmp//cc2uXwYk.s:3644:indirect jmp without `*'
/var/tmp//cc2uXwYk.s:3659:indirect jmp without `*'
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/var/tmp//cc2uXwYk.s:3854:indirect jmp without `*'
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bridge.so bridge2.affy.o bridge2.o bridge2_util.o bridge3.o -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c: In function 'up_date_w2':
bridge2.affy.c:300: warning: implicit declaration of function 'dirichlet'
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c bridge2.c -o bridge2.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c bridge2_util.c -o bridge2_util.o
bridge2_util.c: In function 'qr_solve':
bridge2_util.c:570: warning: implicit declaration of function 'dqrdc2_'
bridge2_util.c:585: warning: implicit declaration of function 'dqrcf_'
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c bridge3.c -o bridge3.o
gcc-4.0 -arch ppc -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bridge.so bridge2.affy.o bridge2.o bridge2_util.o bridge3.o -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'bridge'
Formats: text html latex example
bridge.2samples text html latex example
bridge.3samples text html latex example
hiv text html latex
** building package indices ...
* DONE (bridge)