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affyQCReport

1.13.14

Craig Parman		Linux (SUSE 9.2) x86_64[ ERROR ]skipped
Linux (SUSE 10.1) x86_64 ERROR skipped
Linux (SUSE 9.2) i686 ERROR skipped
Solaris 2.9 sparc ERROR skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows Server 2003 NA ERROR skippedskipped
Mac OS X (10.4.6) i686 ERROR skipped
Package: affyQCReport
Version: 1.13.14
Command: /loc/biocbuild/2.0d/R/bin/R CMD build affyQCReport
RetCode: 1
Time: 62.8 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'affyQCReport/DESCRIPTION' ... OK
* preparing 'affyQCReport':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'affyQCReport' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'affyQCReport'
     Formats: text html latex example 
  QCReport                          text    html    latex   example
  borderQC1                         text    html    latex   example
  borderQC2                         text    html    latex   example
  correlationPlot                   text    html    latex   example
  dist2                             text    html    latex   example
  signalDist                        text    html    latex   example
  titlePage                         text    html    latex   example
** building package indices ...
* DONE (affyQCReport)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
Loading required package: simpleaffy
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: xtable
Loading required package: affyPLM
Loading required package: affydata
Loading required package: gcrma
Loading required package: matchprobes
Loading required package: RColorBrewer
Loading required package: geneplotter
Loading required package: annotate
Loading required package: lattice
Warning messages:
1: some row.names duplicated: 936,937 --> row.names NOT used in: data.row.names(row.names, rowsi, i) 
2: some row.names duplicated: 657,1305 --> row.names NOT used in: data.row.names(row.names, rowsi, i) 
3: some row.names duplicated: 936,937 --> row.names NOT used in: data.row.names(row.names, rowsi, i) 
4: some row.names duplicated: 657,1305 --> row.names NOT used in: data.row.names(row.names, rowsi, i) 
5: some row.names duplicated: 936,937 --> row.names NOT used in: data.row.names(row.names, rowsi, i) 
6: some row.names duplicated: 657,1305 --> row.names NOT used in: data.row.names(row.names, rowsi, i) 

Error:  chunk 7 
Error in inherits(x, "data.frame") : no slot of name "exprs" for this object of class "AffyBatch"
Error in buildVignettes(dir = ".") : Error:  chunk 7 
Error in inherits(x, "data.frame") : no slot of name "exprs" for this object of class "AffyBatch"
Execution halted