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| Package 59/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
externalVector1.5.1Biocore Team | Linux (SUSE 9.2) | x86_64 | OK | ERROR | |
| Linux (SUSE 10.1) | x86_64 | OK | [ ERROR ] | ||
| Linux (SUSE 9.2) | i686 | OK | ERROR | ||
| Solaris 2.9 | sparc | OK | ERROR | ||
| Windows Server 2003 | x86_64 | OK | ERROR | OK | |
| Windows Server 2003 | NA | OK | ERROR | OK | |
| Mac OS X (10.4.6) | i686 | OK | ERROR |
| Package: externalVector |
| Version: 1.5.1 |
| Command: /home/biocbuild/2.0d/R/bin/R CMD check externalVector_1.5.1.tar.gz |
| RetCode: 1 |
| Time: 35.0 seconds |
| Status: ERROR |
| CheckDir: externalVector.Rcheck |
| Warnings: NA |
* checking for working latex ... OK
* using log directory '/home/biocbuild/2.0d/Rpacks/externalVector.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.5.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
all any max min prod range sum
Undocumented S4 methods:
generic '[<-' and siglist
'indirectExternalVector,missing,missing,ANY'
generic '[<-' and siglist 'indirectExternalVector,ANY,missing,ANY'
generic '[<-' and siglist
'indirectExternalMatrix,missing,missing,ANY'
generic '[<-' and siglist 'indirectExternalMatrix,ANY,ANY,ANY'
generic 'dimnames<-' and siglist 'indirectExternalVector,ANY'
generic 'dimnames<-' and siglist 'indirectExternalMatrix,ANY'
generic 'initializeResource' and siglist 'nativeStorageMethods,ANY'
generic 'initializeResource' and siglist 'externalStorage,ANY'
generic 'names<-' and siglist 'indirectExternalMatrix,ANY'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating externalVector-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'externalVector-Ex.R' failed.
The error most likely occurred in:
> ### * asEach
>
> flush(stderr()); flush(stdout())
>
> ### Name: asEach
> ### Title: Coerce each element of an external vector to a particular type
> ### Aliases: asEach asEach,ANY,character-method
> ### Keywords: classes
>
> ### ** Examples
>
> x <- externalCharacter(4)
Error in initializeResource(resource, ptr, size, type, ...) :
Trying to call virtual method for "initializeResource" with signature resource = "nativeStorageMethods"
Execution halted
externalVector.Rcheck/00install.out:
* Installing *source* package 'externalVector' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include -fpic -g -O2 -Wall -c allocator.c -o allocator.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include -fpic -g -O2 -Wall -c arraySummary.c -o arraySummary.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include -fpic -g -O2 -Wall -c coerce.c -o coerce.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include -fpic -g -O2 -Wall -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include -fpic -g -O2 -Wall -c groups.c -o groups.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include -fpic -g -O2 -Wall -c math.c -o math.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include -fpic -g -O2 -Wall -c slice.c -o slice.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include -fpic -g -O2 -Wall -c storage.c -o storage.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include -fpic -g -O2 -Wall -c subscript.c -o subscript.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o externalVector.so allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o
** R
** save image
Creating a new generic function for "names" in "externalVector"
Creating a new generic function for "names<-" in "externalVector"
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.logical" in "externalVector"
Creating a new generic function for "as.numeric" in "externalVector"
Creating a new generic function for "as.double" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.complex" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Creating a new generic function for "log" in "externalVector"
Creating a new generic function for "apply" in "externalVector"
Creating a new generic function for "lapply" in "externalVector"
Creating a new generic function for "sapply" in "externalVector"
Creating a new generic function for "mean" in "externalVector"
Creating a new generic function for "median" in "externalVector"
Creating a new generic function for "cov2cor" in "externalVector"
** help
>>> Building/Updating help pages for package 'externalVector'
Formats: text html latex example
NAIndex-class text html latex
SubscriptList text html latex example
Subset text html latex
allIndex-class text html latex
allNA text html latex example
allocators text html latex
as.Rvector text html latex example
asEach text html latex example
defaultElement text html latex example
exprMatrix-class text html latex
externalAllocator-class text html latex
externalMatrix text html latex example
externalResource-class text html latex
externalStorage-class text html latex
externalVector-class text html latex
externalVector text html latex example
externalVectorWithStorage-class text html latex
gcAllocator-class text html latex example
getExternalStorage text html latex
getNativeStorageMethods text html latex
indirectExternalMatrix-class text html latex
indirectExternalVector-class text html latex
internalType text html latex
makeSlice text html latex example
matrixIndex-class text html latex
nativeStorageMethods-class text html latex
nativeStorageMethodsList-class text html latex
nonSlotAttributes text html latex
noneIndex-class text html latex
positiveIndex-class text html latex
rebind text html latex
setDimNames text html latex
setExternalStorageClass text html latex example
setVirtualMethod text html latex example
simpleStorage-class text html latex
sliceIndex-class text html latex
union-class text html latex
var text html latex example
vectorIndex-class text html latex
** building package indices ...
* DONE (externalVector)