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Package 36/208OSArchBUILDCHECKBUILD BIN

BSgenome

1.3.7

H. Pages		Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 10.1) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK [ OK ]
Solaris 2.9 sparc OK  OK 
Windows Server 2003 x86_64 OK  OK  OK 
Windows Server 2003 NA OK  ERROR  OK 
Mac OS X (10.4.6) i686 OK  ERROR 
Package: BSgenome
Version: 1.3.7
Command: /loc/biocbuild/2.0d/R/bin/R CMD check BSgenome_1.3.7.tar.gz
RetCode: 0
Time: 90.9 seconds
Status: OK
CheckDir: BSgenome.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/2.0d/Rpacks/BSgenome.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'BSgenome/DESCRIPTION' ... OK
* this is package 'BSgenome' version '1.3.7'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BSgenome' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating BSgenome-Ex.R ... OK
* checking examples ... OK
* creating BSgenome-manual.tex ... OK
* checking BSgenome-manual.tex ... OK

BSgenome.Rcheck/00install.out:

* Installing *source* package 'BSgenome' ...
** R
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: Biostrings
Creating a new generic function for "names" in "BSgenome"
** help
 >>> Building/Updating help pages for package 'BSgenome'
     Formats: text html latex example 
  BSgenome-class                    text    html    latex   example
  available.genomes                 text    html    latex   example
  buildDataFiles                    text    html    latex   example
  getSeq                            text    html    latex   example
** building package indices ...
* DONE (BSgenome)