Package: matchprobes

Version: 1.7.3

Command: /loc/biocbuild/2.0d/R/bin/R CMD build matchprobes

RetCode: 1

Time: 30.3 seconds

Status: ERROR

PackageFile: None

* checking for file 'matchprobes/DESCRIPTION' ... OK
* preparing 'matchprobes':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'matchprobes' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c matchprobes.c -o matchprobes.o
gcc -std=gnu99 -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c strutils.c -o strutils.o
gcc -std=gnu99 -shared -L/usr/local/lib -o matchprobes.so matchprobes.o strutils.o   
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
** help
 >>> Building/Updating help pages for package 'matchprobes'
     Formats: text html latex example 
  basecontent                       text    html    latex   example
  combineAffyBatch                  text    html    latex   example
  complementSeq                     text    html    latex   example
  getProbeDataAffy                  text    html    latex   example
  getProbeData_1lq                  text    html    latex   example
  longestConsecutive                text    html    latex   example
  makeProbePackage                  text    html    latex   example
  matchprobes                       text    html    latex   example
  print.probetable                  text    html    latex   example
  reverseSeq                        text    html    latex   example
** building package indices ...
* DONE (matchprobes)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio

Attaching package: 'hu6800cdf'


	The following object(s) are masked from package:hgu95av2cdf :

	 i2xy 

	The following object(s) are masked from package:hgu95av2cdf :

	 xy2i 


Error:  chunk 8 (label=loadcel) 
Error: /tmp/Rinst1493614890/matchprobes/extdata/118T1.cel.gz does not appear to be a CEL file.
 This can be caused by subtle errors:
 1.) Passing a filename argument without using filename=
 2.) Mis-spelling an argument (e.g., 'samepleNames').
 3.) The obvious - passing a non-CEL file.
Error in buildVignettes(dir = ".") : Error:  chunk 8 (label=loadcel) 
Error: /tmp/Rinst1493614890/matchprobes/extdata/118T1.cel.gz does not appear to be a CEL file.
 This can be caused by subtle errors:
 1.) Passing a filename argument without using filename=
 2.) Mis-spelling an argument (e.g., 'samepleNames').
 3.) The obvious - passing a non-CEL file.
Execution halted