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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 44/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
CALIB1.3.1Hui ZhaoLast Changed Date: 2007-06-10 10:22:32 -0700 Last Changed Rev: 25301 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ WARNINGS ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: CALIB |
Version: 1.3.1 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check CALIB_1.3.1.tar.gz |
RetCode: 0 |
Time: 183.4 seconds |
Status: WARNINGS |
CheckDir: CALIB.Rcheck |
Warnings: 2 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/CALIB.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'CALIB/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CALIB' version '1.3.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'CALIB' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE getColClasses: no visible global function definition for 'namesInFun' plotSpikeCI: no visible binding for global variable 'otherindex' read.rg: no visible global function definition for 'readBlueFuseHeader' read.spike: no visible binding for global variable 'files' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Functions/methods with usage in documentation object 'subset' but not in code: [ * checking Rd \usage sections ... WARNING Objects in \usage without \alias in documentation object 'subset': [ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating CALIB-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating CALIB-manual.tex ... OK * checking CALIB-manual.tex ... OK WARNING: There were 2 warnings, see /extra/loc/biocbuild/bbs-2.1-bioc/meat/CALIB.Rcheck/00check.log for details
CALIB.Rcheck/00install.out:
* Installing *source* package 'CALIB' ... ** libs g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c Design.cpp -o Design.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c Estimation.cpp -o Estimation.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c NormalizedData.cpp -o NormalizedData.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c ParameterofOneArray.cpp -o ParameterofOneArray.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c RawDataofOneArray.cpp -o RawDataofOneArray.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c SpikeofOneArray.cpp -o SpikeofOneArray.o g++ -shared -L/usr/local/lib -o CALIB.so Design.o Estimation.o NormalizedData.o ParameterofOneArray.o RawDataofOneArray.o SpikeofOneArray.o -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** preparing package for lazy loading Loading required package: limma ** help >>> Building/Updating help pages for package 'CALIB' Formats: text html latex example ParameterList-class text html latex RG text html latex example RGList_CALIB-class text html latex SpikeList-class text html latex adjustP2 text html latex example calibReadMe text html latex example cbind text html latex example dim text html latex example dimnames text html latex example estimateParameter text html latex example getColClasses text html latex example merge text html latex example normalizeData text html latex example normdata text html latex example parameter text html latex example plotNormalizedData text html latex example plotSpikeCI text html latex example plotSpikeHI text html latex example plotSpikeRG text html latex example plotSpikeSpotError text html latex example read.rg text html latex example read.spike text html latex spike text html latex example subset text html latex example ** building package indices ... * DONE (CALIB)