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SNPchip

1.1.22

Robert Scharpf
Last Changed Date: 2007-08-17 10:17:52 -0700
Last Changed Rev: 26478
lamb1 Linux (SUSE 10.1) x86_64 [ OK ] OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) x64  OK  OK  OK 
pitt Mac OS X (10.4.10) i386  OK  OK  OK 
Package: SNPchip
Version: 1.1.22
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build SNPchip
RetCode: 0
Time: 29.5 seconds
Status: OK
PackageFile: SNPchip_1.1.22.tar.gz

Command output

* checking for file 'SNPchip/DESCRIPTION' ... OK
* preparing 'SNPchip':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'SNPchip' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "SNPchip"
** help
 >>> Building/Updating help pages for package 'SNPchip'
     Formats: text html latex example 
  DEPRECATED-classes                text    html    latex
  ParESet-class                     text    html    latex   example
  ParSnpCallSet-class               text    html    latex   example
  ParSnpCopyNumberSet-class         text    html    latex   example
  ParSnpSet-class                   text    html    latex   example
  addFeatureData-method             text    html    latex
  allPlots-methods                  text    html    latex
  alleleA                           text    html    latex   example
  alleleB                           text    html    latex   example
  calculateCopyNumber               text    html    latex
  centromere                        text    html    latex   example
  chromosome                        text    html    latex
  chromosomeAnnotation              text    html    latex   example
  chromosomeSize                    text    html    latex   example
  classes                           text    html    latex
  coerce-methods                    text    html    latex
  cytoband                          text    html    latex   example
  dbSnpId                           text    html    latex   example
  enzyme                            text    html    latex   example
  fragmentLength                    text    html    latex   example
  getPar-methods                    text    html    latex
  getSnpAnnotation                  text    html    latex   example
  hapmap                            text    html    latex   example
  initialize-methods                text    html    latex
  oligoSnpSet-class                 text    html    latex
  plotCytoband                      text    html    latex   example
  plotSnp                           text    html    latex   example
  position                          text    html    latex
  sample.snpset                     text    html    latex   example
  selectSomeIndex                   text    html    latex   example
  show-methods                      text    html    latex
  showSummary                       text    html    latex   example
  smoothSnp                         text    html    latex   example
  snpPar                            text    html    latex   example
  summary-methods                   text    html    latex
  unsplitSnpSet                     text    html    latex   example
** building package indices ...
* DONE (SNPchip)
* creating vignettes ... OK
* removing junk files
* excluding invalid files from 'SNPchip'
Subdirectory 'man' contains invalid file names:
  .calculateYlim.Rd
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'SNPchip_1.1.22.tar.gz'