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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 29/247HostnameOSArchBUILDCHECKBUILD BIN

beadarraySNP

1.3.7

Jan Oosting
Last Changed Date: 2007-07-26 08:38:57 -0700
Last Changed Rev: 25976
lamb1 Linux (SUSE 10.1) x86_64  OK  WARNINGS 
wellington Linux (SUSE 9.2) i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) x64 [ OK ] WARNINGS  OK 
pitt Mac OS X (10.4.10) i386  OK  WARNINGS  OK 
Package: beadarraySNP
Version: 1.3.7
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build beadarraySNP
RetCode: 0
Time: 43.0 seconds
Status: OK
PackageFile: beadarraySNP_1.3.7.tar.gz

Command output

* checking for file 'beadarraySNP/DESCRIPTION' ... OK
* preparing 'beadarraySNP':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst96813101


---------- Making package beadarraySNP ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'backgroundEstimate' on or after line 50
Note: unmatched right brace in 'backgroundEstimate.Rd' on or after line 50
Note: unmatched right brace in 'class.SnpSetIllumina' on or after line 133
Note: unmatched right brace in 'class.SnpSetIllumina.Rd' on or after line 133
Note: unmatched right brace in 'heterozygousSNPs' on or after line 57
Note: unmatched right brace in 'heterozygousSNPs.Rd' on or after line 57
Note: unmatched right brace in 'read.SnpSetIllumina' on or after line 80
Note: unmatched right brace in 'read.SnpSetIllumina.Rd' on or after line 80
Note: unmatched right brace in 'smoothed.intensity' on or after line 21
Note: unmatched right brace in 'smoothed.intensity.Rd' on or after line 21
 >>> Building/Updating help pages for package 'beadarraySNP'
     Formats: text html latex example chm 
  CopynumberConversion              text    html    latex   example chm
  Datasets                          text    html    latex           chm
  GenomicReports                    text    html    latex   example chm
  PolarTransforms                   text    html    latex   example chm
  QCIllumina-class                  text    html    latex           chm
  arrayType                         text    html    latex           chm
  backgroundCorrect.SNP             text    html    latex   example chm
  backgroundEstimate                text    html    latex   example chm
  calculateLOH                      text    html    latex   example chm
  calculateQCarray                  text    html    latex   example chm
  class.SnpSetIllumina              text    html    latex           chm
  compareGenotypes                  text    html    latex   example chm
  heterozygosity                    text    html    latex   example chm
  heterozygousSNPs                  text    html    latex   example chm
  normalizeBetweenAlleles.SNP       text    html    latex   example chm
  normalizeLoci.SNP                 text    html    latex   example chm
  normalizeWithinArrays.SNP         text    html    latex   example chm
  pdfChromosomesSmoothCopyNumber    text    html    latex   example chm
  pdfQC                             text    html    latex           chm
  plotQC                            text    html    latex   example chm
  read.SnpSetIllumina               text    html    latex   example chm
  removeLowQualityProbes            text    html    latex           chm
  removeLowQualitySamples           text    html    latex   example chm
  renameOPA                         text    html    latex   example chm
  reportSamplePanelQC-methods       text    html    latex   example chm
  smoothed.intensity                text    html    latex   example chm
  standardNormalization             text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\beadarraySNP\chm\beadarraySNP.chm





Compile time: 0 minutes, 1 second

28	Topics

131	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\beadarraySNP\chm\beadarraySNP.chm, 48,395 bytes

Compression decreased file by 56,360 bytes.

  preparing package beadarraySNP for lazy loading
Loading required package: tools
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: quantsmooth
Loading required package: quantreg
Loading required package: SparseM
Loading required package: lodplot
Loading required package: grid
  adding MD5 sums

* DONE (beadarraySNP)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'beadarraySNP_1.3.7.tar.gz'