Package: codelink

Version: 1.5.15

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check codelink_1.5.15.tar.gz

RetCode: 0

Time: 74.1 seconds

Status: OK

CheckDir: codelink.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/codelink.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'codelink/DESCRIPTION' ... OK
* this is package 'codelink' version '1.5.15'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'codelink' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating codelink-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating codelink-manual.tex ... OK
* checking codelink-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/codelink.Rcheck


---------- Making package codelink ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package codelink for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: limma
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'codelink'
     Formats: text html latex example chm 
  Codelink-class                    text    html    latex   example chm
  Nondocumented-objects             text    html    latex           chm
  SNR                               text    html    latex   example chm
  arrayNew                          text    html    latex   example chm
  arraySize                         text    html    latex           chm
  as.matrix.Codelink                text    html    latex   example chm
  bkgdCorrect                       text    html    latex   example chm
  codelink.example                  text    html    latex           chm
  createWeights                     text    html    latex   example chm
  cutCV                             text    html    latex   example chm
  decDetect                         text    html    latex   example chm
  dim.Codelink                      text    html    latex   example chm
  fc2Cond                           text    html    latex   example chm
  imageCodelink                     text    html    latex   example chm
  logCodelink                       text    html    latex   example chm
  mergeArray                        text    html    latex   example chm
  na2false                          text    html    latex   example chm
  normalize                         text    html    latex   example chm
  normalize.loess                   text    html    latex   example chm
  plotCV                            text    html    latex   example chm
  plotCorrelation                   text    html    latex   example chm
  plotDensities                     text    html    latex   example chm
  plotMA                            text    html    latex   example chm
  printHead                         text    html    latex   example chm
  readCodelink                      text    html    latex   example chm
  readHeader                        text    html    latex   example chm
  readHeaderXLS                     text    html    latex   example chm
  reportCodelink                    text    html    latex   example chm
  selCV                             text    html    latex   example chm
  writeCodelink                     text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\codelink.Rcheck\00_pkg_src\codelink\chm\codelink.chm


Compile time: 0 minutes, 0 seconds
31	Topics
63	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\codelink.Rcheck\00_pkg_src\codelink\chm\codelink.chm, 38,635 bytes
Compression decreased file by 47,426 bytes.
  adding MD5 sums

* DONE (codelink)