Package: fbat

Version: 1.1.2

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build fbat

RetCode: 0

Time: 29.7 seconds

Status: OK

PackageFile: fbat_1.1.2.tar.gz

* checking for file 'fbat/DESCRIPTION' ... OK
* preparing 'fbat':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst91293441

WARNING: true value of 'SaveImage' is deprecated in favour of 'LazyLoad: true'

---------- Making package fbat ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making FBAT.d from FBAT.c
making register.d from register.c
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c FBAT.c -o FBAT.o
FBAT.c: In function `countLines':
FBAT.c:2142: warning: 'tmpnc2' might be used uninitialized in this function
FBAT.c: In function `checkoneNuclearFamily':
FBAT.c:1667: warning: 'sex1' might be used uninitialized in this function
FBAT.c:1667: warning: 'sex2' might be used uninitialized in this function
FBAT.c: In function `checkdecomposePed':
FBAT.c:1590: warning: 'i' might be used uninitialized in this function
FBAT.c: In function `checkCompatible':
FBAT.c:1404: warning: 'start2' might be used uninitialized in this function
FBAT.c: In function `oneNuclearFamily':
FBAT.c:1859: warning: 'sex1' might be used uninitialized in this function
FBAT.c:1859: warning: 'sex2' might be used uninitialized in this function
FBAT.c: In function `decomposePed':
FBAT.c:1986: warning: 'i' might be used uninitialized in this function
FBAT.c: In function `fbat':
FBAT.c:43: warning: 'start2' might be used uninitialized in this function
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c register.c -o register.o
g77 -O3 -Wall   -c missGFreq.f -o missGFreq.o
windres -I e:/biocbld/bbs-2.1-bioc/R/include  -i fbat_res.rc -o fbat_res.o
gcc  -shared -s  -o fbat.dll fbat.def FBAT.o register.o missGFreq.o fbat_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin   -lg2c -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: MASS
Loading required package: GeneticsBase
Loading required package: combinat

Attaching package: 'combinat'


	The following object(s) are masked from package:utils :

	 combn 

Loading required package: xtable
Loading required package: mvtnorm
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'getFounders' on or after line 6
Note: unmatched right brace in 'getFounders.Rd' on or after line 6
 >>> Building/Updating help pages for package 'fbat'
     Formats: text html latex example chm 
  checkMarkers                      text    html    latex   example chm
  checkMendelian                    text    html    latex   example chm
  fbat                              text    html    latex   example chm
  getFounders                       text    html    latex   example chm
  missGFreq                         text    html    latex   example chm
  pedAFreq                          text    html    latex   example chm
  pedFlagHomo                       text    html    latex   example chm
  pedGFreq                          text    html    latex   example chm
  pedHardyWeinberg                  text    html    latex   example chm
  readHapMap                        text    html    latex   example chm
  readLink                          text    html    latex   example chm
  readPed                           text    html    latex   example chm
  sampleInfoCEU                     text    html    latex   example chm
  sampleInfoCHB                     text    html    latex   example chm
  sampleInfoJPT                     text    html    latex   example chm
  sampleInfoYRI                     text    html    latex   example chm
  summaryPvalue                     text    html    latex   example chm
  viewFlagHomo                      text    html    latex   example chm
  viewHW                            text    html    latex   example chm
  viewstat                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\fbat\chm\fbat.chm





Compile time: 0 minutes, 0 seconds

21	Topics

40	Local links

3	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\fbat\chm\fbat.chm, 36,805 bytes

Compression decreased file by 42,506 bytes.

  adding MD5 sums

* DONE (fbat)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'fbat_1.1.2.tar.gz'