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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 74/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
fdrame1.9.0Effi KenigsbergLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ WARNINGS ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: fdrame |
Version: 1.9.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check fdrame_1.9.0.tar.gz |
RetCode: 0 |
Time: 47.7 seconds |
Status: WARNINGS |
CheckDir: fdrame.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/fdrame.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'fdrame/DESCRIPTION' ... OK * this is package 'fdrame' version '1.9.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'fdrame' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... WARNING 'library' or 'require' calls not declared from: tcltk See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE fdr.error: no visible binding for global variable 'fdrtt' fdr.gui: no visible binding for '<<-' assignment to 'fdrtt' fdr.gui: no visible binding for '<<-' assignment to 'designFlag' fdr.gui: no visible binding for '<<-' assignment to 'frameOverall' fdr.gui: no visible binding for global variable 'fdrtt' fdr.gui: no visible binding for '<<-' assignment to 'frameCompute' fdr.gui: no visible binding for global variable 'frameOverall' fdr.gui: no visible binding for '<<-' assignment to 'frameInput' fdr.gui: no visible binding for '<<-' assignment to 'frameOutput' fdr.gui: no visible binding for '<<-' assignment to 'frameFileOutput' fdr.gui: no visible binding for global variable 'frameOutput' fdr.gui: no visible binding for '<<-' assignment to 'framePmethod' fdr.gui: no visible binding for '<<-' assignment to 'frameNorm' fdr.gui: no visible binding for global variable 'frameInput' fdr.gui: no visible binding for '<<-' assignment to 'frameAdj' fdr.gui: no visible binding for '<<-' assignment to 'framePerms' fdr.gui: no visible binding for '<<-' assignment to 'frameplot' fdr.gui: no visible binding for '<<-' assignment to 'filename.input' fdr.gui: no visible binding for '<<-' assignment to 'filename.output' fdr.gui: no visible binding for '<<-' assignment to 'design.tcl' fdr.gui: no visible binding for '<<-' assignment to 'permsNum' fdr.gui: no visible binding for '<<-' assignment to 'entry.Filename.input' fdr.gui: no visible binding for global variable 'filename.input' fdr.gui: no visible binding for '<<-' assignment to 'entry.Filename.output' fdr.gui: no visible binding for global variable 'filename.output' fdr.gui: no visible binding for '<<-' assignment to 'entry.Design' fdr.gui: no visible binding for global variable 'design.tcl' fdr.gui: no visible binding for '<<-' assignment to 'entry.Perms' fdr.gui: no visible binding for global variable 'frameAdj' fdr.gui: no visible binding for global variable 'permsNum' fdr.gui: no visible binding for '<<-' assignment to 'rbpm1' fdr.gui: no visible binding for global variable 'framePmethod' fdr.gui: no visible binding for '<<-' assignment to 'rbpm2' fdr.gui: no visible binding for '<<-' assignment to 'rbno1' fdr.gui: no visible binding for '<<-' assignment to 'rbno2' fdr.gui: no visible binding for '<<-' assignment to 'rbfa1' fdr.gui: no visible binding for '<<-' assignment to 'rbfa2' fdr.gui: no visible binding for '<<-' assignment to 'rbfa3' fdr.gui: no visible binding for '<<-' assignment to 'rbfa4' fdr.gui: no visible binding for '<<-' assignment to 'cbpl1' fdr.gui: no visible binding for global variable 'frameplot' fdr.gui: no visible binding for '<<-' assignment to 'cbpl2' fdr.gui: no visible binding for '<<-' assignment to 'cbpl3' fdr.gui: no visible binding for '<<-' assignment to 'cbfa1' fdr.gui: no visible binding for '<<-' assignment to 'cbfa2' fdr.gui: no visible binding for '<<-' assignment to 'cbfa3' fdr.gui: no visible binding for '<<-' assignment to 'cbfa4' fdr.gui: no visible binding for '<<-' assignment to 'cbfa5' fdr.gui: no visible binding for '<<-' assignment to 'rbpmValue' fdr.gui: no visible binding for '<<-' assignment to 'rbnoValue' fdr.gui: no visible binding for '<<-' assignment to 'rbfaValue' fdr.gui: no visible binding for '<<-' assignment to 'cbpl1Value' fdr.gui: no visible binding for '<<-' assignment to 'cbpl2Value' fdr.gui: no visible binding for '<<-' assignment to 'cbpl3Value' fdr.gui: no visible binding for '<<-' assignment to 'cbfa1Value' fdr.gui: no visible binding for '<<-' assignment to 'cbfa2Value' fdr.gui: no visible binding for '<<-' assignment to 'cbfa3Value' fdr.gui: no visible binding for '<<-' assignment to 'cbfa4Value' fdr.gui: no visible binding for '<<-' assignment to 'cbfa5Value' fdr.gui: no visible binding for global variable 'rbpm1' fdr.gui: no visible binding for global variable 'rbpmValue' fdr.gui: no visible binding for global variable 'rbpm2' fdr.gui: no visible binding for global variable 'rbno1' fdr.gui: no visible binding for global variable 'rbnoValue' fdr.gui: no visible binding for global variable 'rbno2' fdr.gui: no visible binding for global variable 'rbfa1' fdr.gui: no visible binding for global variable 'rbfaValue' fdr.gui: no visible binding for global variable 'rbfa2' fdr.gui: no visible binding for global variable 'rbfa3' fdr.gui: no visible binding for global variable 'rbfa4' fdr.gui: no visible binding for global variable 'cbpl1' fdr.gui: no visible binding for global variable 'cbpl1Value' fdr.gui: no visible binding for global variable 'cbpl2' fdr.gui: no visible binding for global variable 'cbpl2Value' fdr.gui: no visible binding for global variable 'cbpl3' fdr.gui: no visible binding for global variable 'cbpl3Value' fdr.gui: no visible binding for global variable 'cbfa1' fdr.gui: no visible binding for global variable 'cbfa1Value' fdr.gui: no visible binding for global variable 'cbfa2' fdr.gui: no visible binding for global variable 'cbfa2Value' fdr.gui: no visible binding for global variable 'cbfa3' fdr.gui: no visible binding for global variable 'cbfa3Value' fdr.gui: no visible binding for global variable 'cbfa4' fdr.gui: no visible binding for global variable 'cbfa4Value' fdr.gui: no visible binding for global variable 'cbfa5' fdr.gui: no visible binding for global variable 'cbfa5Value' fdr.gui: no visible binding for global variable 'entry.Perms' fdr.gui: no visible binding for '<<-' assignment to 'BrowseInput.but' fdr.gui: no visible binding for '<<-' assignment to 'BrowseDesign.but' fdr.gui: no visible binding for '<<-' assignment to 'BrowseOutput.but' fdr.gui: no visible binding for '<<-' assignment to 'Compute.but' fdr.gui: no visible binding for global variable 'frameCompute' fdr.gui: no visible binding for '<<-' assignment to 'Help.but' fdr.gui: no visible binding for global variable 'entry.Filename.input' fdr.gui: no visible binding for global variable 'BrowseInput.but' fdr.gui: no visible binding for global variable 'entry.Design' fdr.gui: no visible binding for global variable 'BrowseDesign.but' fdr.gui: no visible binding for global variable 'entry.Filename.output' fdr.gui: no visible binding for global variable 'BrowseOutput.but' fdr.gui: no visible binding for global variable 'Help.but' fdr.gui: no visible binding for global variable 'Compute.but' OnBrowseDesign: no visible binding for global variable 'designFlag' OnBrowseDesign: no visible binding for '<<-' assignment to 'designFlag' OnBrowseDesign: no visible binding for '<<-' assignment to 'vector.list' OnBrowseDesign: no visible binding for global variable 'vector.list' OnBrowseDesign: no visible binding for '<<-' assignment to 'ttdesignlist' OnBrowseDesign: no visible binding for '<<-' assignment to 'tl' OnBrowseDesign: no visible binding for global variable 'ttdesignlist' OnBrowseDesign: no visible binding for global variable 'tl' OnBrowseDesign: no visible binding for global variable 'fdrtt' OnBrowseInput: no visible binding for '<<-' assignment to 'filename.input.tk' OnBrowseInput: no visible binding for global variable 'filename.input.tk' OnBrowseInput: no visible binding for '<<-' assignment to 'filename.input' OnBrowseInput: no visible binding for global variable 'entry.Filename.input' OnBrowseInput: no visible binding for global variable 'filename.input' OnBrowseOutput: no visible binding for '<<-' assignment to 'filename.output.tk' OnBrowseOutput: no visible binding for global variable 'filename.output.tk' OnBrowseOutput: no visible binding for '<<-' assignment to 'filename.output' OnBrowseOutput: no visible binding for global variable 'entry.Filename.output' OnBrowseOutput: no visible binding for global variable 'filename.output' OnCancel: no visible binding for global variable 'ttdesignlist' OnCancel: no visible binding for global variable 'fdrtt' OnCancel: no visible binding for '<<-' assignment to 'designFlag' OnCbfa1: no visible binding for global variable 'cbfa1Value' OnCbfa1: no visible binding for '<<-' assignment to 'cbfa5Value' OnCbfa1: no visible binding for global variable 'cbfa5' OnCbfa2: no visible binding for global variable 'cbfa2Value' OnCbfa2: no visible binding for '<<-' assignment to 'cbfa5Value' OnCbfa2: no visible binding for global variable 'cbfa5' OnCbfa3: no visible binding for global variable 'cbfa3Value' OnCbfa3: no visible binding for '<<-' assignment to 'cbfa5Value' OnCbfa3: no visible binding for global variable 'cbfa5' OnCbfa4: no visible binding for global variable 'cbfa4Value' OnCbfa4: no visible binding for '<<-' assignment to 'cbfa5Value' OnCbfa4: no visible binding for global variable 'cbfa5' OnCompute: no visible binding for global variable 'fdrtt' OnCompute: no visible binding for global variable 'rbnoValue' OnCompute: no visible binding for global variable 'rbfaValue' OnCompute: no visible binding for global variable 'cbpl1Value' OnCompute: no visible binding for global variable 'cbpl2Value' OnCompute: no visible binding for global variable 'cbpl3Value' OnCompute: no visible binding for global variable 'cbfa1Value' OnCompute: no visible binding for global variable 'cbfa2Value' OnCompute: no visible binding for global variable 'cbfa3Value' OnCompute: no visible binding for global variable 'cbfa4Value' OnCompute: no visible binding for global variable 'cbfa5Value' OnCompute: no visible binding for global variable 'filename.input' OnCompute: no visible binding for global variable 'filename.output' OnCompute: no visible binding for global variable 'design.tcl' OnCompute: no visible binding for global variable 'permsNum' OnCompute: no visible binding for '<<-' assignment to 'a' OnOK: no visible binding for global variable 'vector.list' OnOK: no visible binding for global variable 'tl' OnOK: no visible binding for global variable 'ttdesignlist' OnOK: no visible binding for '<<-' assignment to 'designVal' OnOK: no visible binding for '<<-' assignment to 'design.tcl' OnOK: no visible binding for global variable 'entry.Design' OnOK: no visible binding for global variable 'design.tcl' OnOK: no visible binding for global variable 'fdrtt' OnOK: no visible binding for '<<-' assignment to 'designFlag' OnRbfa1: no visible binding for global variable 'cbfa1' OnRbfa1: no visible binding for global variable 'cbfa2' OnRbfa2: no visible binding for global variable 'cbfa1' OnRbfa2: no visible binding for global variable 'cbfa2' OnRbfa3: no visible binding for global variable 'cbfa1' OnRbfa3: no visible binding for global variable 'cbfa2' OnRbfa4: no visible binding for global variable 'cbfa1' OnRbfa4: no visible binding for global variable 'cbfa2' OnRbpm1: no visible binding for global variable 'entry.Perms' OnRbpm2: no visible binding for global variable 'entry.Perms' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating fdrame-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating fdrame-manual.tex ... OK * checking fdrame-manual.tex ... OK WARNING: There was 1 warning, see /extra/loc/biocbuild/bbs-2.1-bioc/meat/fdrame.Rcheck/00check.log for details
fdrame.Rcheck/00install.out:
* Installing *source* package 'fdrame' ... ** libs gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c fdr.c -o fdr.o gcc -std=gnu99 -shared -L/usr/local/lib -o fdrame.so fdr.o -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** preparing package for lazy loading ** help >>> Building/Updating help pages for package 'fdrame' Formats: text html latex example design text html latex example exp.arr text html latex example fdr-internal text html latex fdrgui text html latex example fdrma text html latex example ** building package indices ... * DONE (fdrame)