Back to the "Multiple platform build/check report"
| IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
| Package 122/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
limma2.11.10Gordon SmythLast Changed Date: 2007-08-17 01:48:31 -0700 Last Changed Rev: 26473 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
| wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ WARNINGS ] | OK | |
| pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
| Package: limma |
| Version: 2.11.10 |
| Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check limma_2.11.10.tar.gz |
| RetCode: 0 |
| Time: 138.6 seconds |
| Status: WARNINGS |
| CheckDir: limma.Rcheck |
| Warnings: 3 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/limma.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'limma/DESCRIPTION' ... OK * this is package 'limma' version '2.11.10' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'limma' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING Rd files with unknown encoding: ebayes.Rd See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Functions/methods with usage in documentation object 'subsetting' but not in code: [ * checking Rd \usage sections ... WARNING Objects in \usage without \alias in documentation object 'subsetting': [ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * creating limma-Ex.R ... OK * checking examples ... OK * checking tests ... make[1]: Entering directory `/cygdrive/e/biocbld/bbs-2.1-bioc/meat/limma.Rcheck/tests' Running 'limma-Tests.R' Comparing 'limma-Tests.Rout' to 'limma-Tests.Rout.save' ...OK make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-2.1-bioc/meat/limma.Rcheck/tests' OK * checking package vignettes in 'inst/doc' ... OK * creating limma-manual.tex ... OK * checking limma-manual.tex ... OK WARNING: There were 3 warnings, see E:/biocbld/bbs-2.1-bioc/meat/limma.Rcheck/00check.log for details
limma.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/limma.Rcheck
---------- Making package limma ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
preparing package limma for lazy loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'limma'
Formats: text html latex example chm
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Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.1-bioc\meat\limma.Rcheck\00_pkg_src\limma\chm\limma.chm
Compile time: 0 minutes, 1 second
129 Topics
671 Local links
17 Internet links
1 Graphic
Created e:\biocbld\bbs-2.1-bioc\meat\limma.Rcheck\00_pkg_src\limma\chm\limma.chm, 210,370 bytes
Compression decreased file by 325,936 bytes.
adding MD5 sums
* DONE (limma)