Back to the "Multiple platform build/check report"
IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 128/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
maanova1.7.0Lei WuLast Changed Date: 2007-06-10 10:22:32 -0700 Last Changed Rev: 25301 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ WARNINGS ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: maanova |
Version: 1.7.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check maanova_1.7.0.tar.gz |
RetCode: 0 |
Time: 49.2 seconds |
Status: WARNINGS |
CheckDir: maanova.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/maanova.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'maanova/DESCRIPTION' ... OK * this is package 'maanova' version '1.7.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'maanova' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE exprSet2Rawdata: no visible global function definition for 'exprs' exprSet2Rawdata: no visible global function definition for 'geneNames' exprSet2Rawdata: no visible global function definition for 'pData' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'maanova-internal': plot.consensus.hc plot.consensus.kmean The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... WARNING Found the following Makefiles with CR or CRLF line endings: src/Makefile Some Unix makes require LF line endings. * checking for portable use of $BLAS_LIBS ... OK * creating maanova-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating maanova-manual.tex ... OK * checking maanova-manual.tex ... OK WARNING: There was 1 warning, see E:/biocbld/bbs-2.1-bioc/meat/maanova.Rcheck/00check.log for details
maanova.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/maanova.Rcheck ---------- Making package maanova ------------ adding build stamp to DESCRIPTION running src/Makefile.win ... gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -O2 -c masvd.c -o masvd.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -O2 -c makeratio.c -o makeratio.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -O2 -c util.c -o util.o gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -O2 -c shift.c -o shift.o gcc --shared -s -o maanova.dll masvd.o makeratio.o util.o shift.o -Le:/biocbld/bbs-2.1-bioc/R/src/gnuwin32 -Le:/biocbld/bbs-2.1-bioc/R/bin -lRlapack -lR ... done installing DLL installing R files installing demos installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'maanova' Formats: text html latex example chm Rmaanova.version text html latex example chm abf1 text html latex example chm adjPval text html latex example chm arrayview text html latex example chm consensus text html latex example chm createData text html latex example chm dyeswapfilter text html latex example chm exprSet2Rawdata text html latex chm fill.missing text html latex example chm fitmaanova text html latex example chm fom text html latex example chm geneprofile text html latex example chm gridcheck text html latex example chm kidney text html latex example chm maanova-internal text html latex example chm macluster text html latex example chm makeModel text html latex example chm matest text html latex example chm paigen text html latex example chm read.madata text html latex example chm resiplot text html latex example chm riplot text html latex example chm subset.madata text html latex example chm transform.madata text html latex example chm varplot text html latex example chm volcano text html latex example chm write.madata text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\maanova.Rcheck\00_pkg_src\maanova\chm\maanova.chm Compile time: 0 minutes, 0 seconds 28 Topics 82 Local links 0 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\maanova.Rcheck\00_pkg_src\maanova\chm\maanova.chm, 70,524 bytes Compression decreased file by 63,497 bytes. preparing package maanova for lazy loading adding MD5 sums * DONE (maanova)