BioC 2.1: CHECK report for metaArray on wellington

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/metaArray.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'metaArray/DESCRIPTION' ... OK
* this is package 'metaArray' version '1.11.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'metaArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
poe.mcmc: no visible binding for global variable 'R0'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating metaArray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating metaArray-manual.tex ... OK
* checking metaArray-manual.tex ... OK

* Installing *source* package 'metaArray' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c contr.c -o contr.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c dproc2.c -o dproc2.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c dproc.c -o dproc.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c intcor.c -o intcor.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c lowess.c -o lowess.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c mmath.c -o mmath.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c perm.c -o perm.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include   -DUSEDOUBLE -fpic  -g -O2 -Wall -c poe.c -o poe.o
poe.c: In function `poe_one_iter':
poe.c:431: warning: suggest parentheses around comparison in operand of &
poe.c:437: warning: suggest parentheses around comparison in operand of &
poe.c:438: warning: suggest parentheses around comparison in operand of |
gcc -std=gnu99 -shared -L/usr/local/lib -o metaArray.so contr.o dproc2.o dproc.o intcor.o lowess.o mmath.o perm.o poe.o -lm  -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'metaArray'
     Formats: text html latex example 
  Zscore                            text    html    latex   example
  em.draw                           text    html    latex   example
  find.init                         text    html    latex   example
  fit.em                            text    html    latex   example
  intcor                            text    html    latex   example
  logit                             text    html    latex
  mdata                             text    html    latex
  poe.em                            text    html    latex   example
  poe.mcmc                          text    html    latex   example
** building package indices ...
* DONE (metaArray)

Package 144/247	Hostname	OS	Arch	BUILD	CHECK	BUILD BIN
metaArray 1.11.0 Hyungwon Choi Last Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217	lamb1	Linux (SUSE 10.1)	x86_64	OK	OK
	wellington	Linux (SUSE 9.2)	i686	OK	[ OK ]
	liverpool	Windows Server 2003 R2 (32-bit)	x64	OK	OK	OK
	pitt	Mac OS X (10.4.10)	i386	OK	OK	OK

metaArray

1.11.0

Command output