Package: pkgDepTools

Version: 1.3.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build pkgDepTools

RetCode: 1

Time: 56.0 seconds

Status: ERROR

PackageFile: None

* checking for file 'pkgDepTools/DESCRIPTION' ... OK
* preparing 'pkgDepTools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'pkgDepTools' ...
** R
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: RBGL
** help
 >>> Building/Updating help pages for package 'pkgDepTools'
     Formats: text html latex example 
  basicInstallOrder                 text    html    latex
  cleanPkgField                     text    html    latex
  getDownloadSize                   text    html    latex
  getInstallOrder                   text    html    latex
  makeDepGraph                      text    html    latex   example
  makePkgUrl                        text    html    latex
  parseContentLength                text    html    latex
  pkgDepTools-package               text    html    latex
** building package indices ...
* DONE (pkgDepTools)
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: RBGL

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Error: Layout type: "dot" not recognized. Use one of: circo dot fdp neato nop nop1 nop2 twopi

 *** caught bus error ***
address 0x3c, cause 'non-existent physical address'

Traceback:
 1: .Call("Rgraphviz_doLayout", graph, as.integer(type), PACKAGE = "Rgraphviz")
 2: layoutGraph(g)
 3: agopen(x, name = name, layout = TRUE, layoutType = y, attrs = attrs,     nodeAttrs = nodeAttrs, edgeAttrs = edgeAttrs, subGList = subGList,     recipEdges = recipEdges)
 4: .local(x, y, ...)
 5: plot(categoryGraph, nodeAttrs = nn)
 6: plot(categoryGraph, nodeAttrs = nn)
 7: eval.with.vis(expr, .GlobalEnv, baseenv())
 8: doTryCatch(return(expr), name, parentenv, handler)
 9: tryCatchOne(expr, names, parentenv, handlers[[1]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch(expr, error = function(e) {    call <- conditionCall(e)    if (!is.null(call)) {        if (identical(call[[1]], quote(doTryCatch)))             call <- sys.call(-4)        dcall <- deparse(call)[1]        prefix <- paste("Error in", dcall, ": ")        LONG <- 75        msg <- conditionMessage(e)        sm <- strsplit(msg, "\n")[[1]]        if (14 + nchar(dcall, type = "w") + nchar(sm[1], type = "w") >             LONG)             prefix <- paste(prefix, "\n  ", sep = "")    }    else prefix <- "Error : "    msg <- paste(prefix, conditionMessage(e), "\n", sep = "")    .Internal(seterrmessage(msg[1]))    if (!silent && identical(getOption("show.error.messages"),         TRUE)) {        cat(msg, file = stderr())        .Internal(printDeferredWarnings())    }    invisible(structure(msg, class = "try-error"))})
12: try(.Internal(eval.with.vis(expr, .GlobalEnv, baseenv())), silent = TRUE)
13: evalFunc(ce, options)
14: driver$runcode(drobj, chunk, chunkopts)
15: utils::Sweave(f, quiet = quiet)
16: doTryCatch(return(expr), name, parentenv, handler)
17: tryCatchOne(expr, names, parentenv, handlers[[1]])
18: tryCatchList(expr, classes, parentenv, handlers)
19: tryCatch(utils::Sweave(f, quiet = quiet), error = function(e) {    stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s",         f, conditionMessage(e)), domain = NA, call. = FALSE)})
20: buildVignettes(dir = ".")
aborting ...
dyld: Library not loaded: /usr/lib/libncurses.5.4.dylib
  Referenced from: /bin/sh
  Reason: image not found