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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1
Package 175/247HostnameOSArchBUILDCHECKBUILD BIN

plgem

1.9.0

Mattia Pelizzola
Last Changed Date: 2007-04-24 11:31:42 -0700
Last Changed Rev: 24217
lamb1 Linux (SUSE 10.1) x86_64  ERROR skipped
wellington Linux (SUSE 9.2) i686 [ ERROR ]skipped
liverpool Windows Server 2003 R2 (32-bit) x64  ERROR skippedskipped
pitt Mac OS X (10.4.10) i386  ERROR skippedskipped
Package: plgem
Version: 1.9.0
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build plgem
RetCode: 1
Time: 8.8 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'plgem/DESCRIPTION' ... OK
* preparing 'plgem':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'plgem' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'plgem'
     Formats: text html latex example 
  LPSeset                           text    html    latex   example
  plgem.deg                         text    html    latex   example
  plgem.fit                         text    html    latex   example
  plgem.obsStn                      text    html    latex   example
  run.plgem                         text    html    latex   example
** building package indices ...
* DONE (plgem)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: MASS

Error: processing vignette 'plgem.Rnw' failed with diagnostics:
 chunk 1 (label=PLGEMwrapper) 
Error in run.plgem(esdata = LPSeset) : 
  At least 2 conditions are needed in object esdata for function run.plgem
Execution halted