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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 177/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
ppiStats1.3.8Tony ChiangLast Changed Date: 2007-07-06 03:09:46 -0700 Last Changed Rev: 25673 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ WARNINGS ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: ppiStats |
Version: 1.3.8 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check ppiStats_1.3.8.tar.gz |
RetCode: 0 |
Time: 209.4 seconds |
Status: WARNINGS |
CheckDir: ppiStats.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'ppiStats/DESCRIPTION' ... OK * this is package 'ppiStats' version '1.3.8' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'ppiStats' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ppiHGTest4GO: possible error in htmlReport(results, file = paste(filename, ".html", sep = ""), append = append, label = paste(label, ": ", typeGeneSet, sep = ""), categorySize = cs): unused argument(s) (categorySize = cs) ppiHGTest4PFAM: possible error in htmlReport(results, file = paste(filename, ".html", sep = ""), append = append, label = paste(label, ": ", typeGeneSet, sep = ""), categorySize = cs): unused argument(s) (categorySize = cs) * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating ppiStats-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... WARNING Package vignettes without corresponding PDF: E:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck/00_pkg_src/ppiStats/inst/doc/supp.Rnw *** Weave Errors *** File E:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck/inst/doc/supp.Rnw : Error : chunk 9 (label=hgTest) Error in get(mapName, envir = pkgEnv) : variable "YEASTENTREZID" was not found *** Source Errors *** File E:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck/inst/doc/supp.R : Error in get(mapName, envir = pkgEnv) : variable "YEASTENTREZID" was not found * creating ppiStats-manual.tex ... OK * checking ppiStats-manual.tex ... OK WARNING: There was 1 warning, see E:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck/00check.log for details
ppiStats.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/ppiStats.Rcheck ---------- Making package ppiStats ------------ adding build stamp to DESCRIPTION installing R files installing inst files installing man source files installing indices installing help >>> Building/Updating help pages for package 'ppiStats' Formats: text html latex example chm assessSymmetry text html latex example chm bpMatrix text html latex example chm calcInOutDegStats text html latex example chm estErrProbMethodOfMoments text html latex example chm genBPGraph text html latex example chm hgParams text html latex example chm hgTests text html latex example chm idProteinErrorType text html latex example chm idProteinType text html latex example chm nullDistDoublyTestedEdges text html latex example chm twPERM text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm Compile time: 0 minutes, 0 seconds 12 Topics 28 Local links 2 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\ppiStats.Rcheck\00_pkg_src\ppiStats\chm\ppiStats.chm, 34,007 bytes Compression decreased file by 12,062 bytes. adding MD5 sums * DONE (ppiStats)