Back to the "Multiple platform build/check report"
| IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
| Package 238/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
topGO1.3.0Adrian AlexaLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | ERROR | skipped | |
| wellington | Linux (SUSE 9.2) | i686 | [ ERROR ] | skipped | ||
| liverpool | Windows Server 2003 R2 (32-bit) | x64 | ERROR | skipped | skipped | |
| pitt | Mac OS X (10.4.10) | i386 | ERROR | skipped | skipped |
| Package: topGO |
| Version: 1.3.0 |
| Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build topGO |
| RetCode: 1 |
| Time: 212.3 seconds |
| Status: ERROR |
| PackageFile: None |
* checking for file 'topGO/DESCRIPTION' ... OK
* preparing 'topGO':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'topGO' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GO
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: SparseM
Package SparseM (0.73) loaded. To cite, see citation("SparseM")
Creating a new generic function for "print" in "topGO"
** help
Note: unmatched right brace in 'buildGOgraph.topology' on or after line 21
Note: unmatched right brace in 'classicScore-class' on or after line 69
>>> Building/Updating help pages for package 'topGO'
Formats: text html latex example
GOFisherTest text html latex
GOKSTest text html latex
GOdata text html latex example
annFUN.hgu text html latex example
buildGOgraph.topology text html latex
buildLevels text html latex example
classicCount-class text html latex example
classicScore-class text html latex example
elimCount-class text html latex example
elimScore-class text html latex example
getPvalues text html latex example
getSigGroups text html latex example
groupGOTerms text html latex example
groupStats-class text html latex example
inducedGraph text html latex example
mapGenes2GOgraph text html latex example
printGenes-methods text html latex
printGraph-methods text html latex example
reverseArch text html latex example
topGO-package text html latex
topGOdata-class text html latex example
topGOresult-class text html latex
weightCount-class text html latex example
weightScore-class text html latex
** building package indices ...
* DONE (topGO)
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: GO
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: SparseM
Loading required package: survival
Loading required package: splines
Loading required package: multtest
Error: processing vignette 'topGO.Rnw' failed with diagnostics:
chunk 31
Error in eval.with.vis(expr, .GlobalEnv, baseenv()) :
could not find function "print.xtable"
Execution halted