EBImage 2.2.0
Oleg Sklyar
| Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/EBImage | | Last Changed Rev: 27709 / Revision: 30807 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | [ OK ] |
INSTALLATION WITH 'R CMD INSTALL EBImage_2.2.0.tar.gz'
* Installing to library 'EBImage.buildbin-libdir'
* Installing *source* package 'EBImage' ...
checking for Magick-config... yes
* found ImageMagick version 6.3.3
* found ImageMagick includes in -I/usr/local/include
checking for pkg-config... no
checking for pkgconfig... (cached) no
* pkg-config/pkgconfig not found: compiling without GTK+ support
-----------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c EBImage.c -o EBImage.o
EBImage.c: In function 'R_unload_EBImage':
EBImage.c:137: warning: unused parameter 'winDll'
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c colors.c -o colors.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c conversions.c -o conversions.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c display.c -o display.o
display.c: In function 'lib_display':
display.c:44: warning: unused parameter 'caption'
display.c:44: warning: unused parameter 'nogtk'
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c drawable.c -o drawable.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c features_haralick.c -o features_haralick.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c features_hull.c -o features_hull.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c features_moments.c -o features_moments.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c features_zernike.c -o features_zernike.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c filters_distmap.c -o filters_distmap.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c filters_magick.c -o filters_magick.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c filters_morph.c -o filters_morph.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c filters_normalize.c -o filters_normalize.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c filters_propagate.cpp -o filters_propagate.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c filters_thresh.c -o filters_thresh.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c filters_watershed.cpp -o filters_watershed.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c io.c -o io.o
io.c: In function 'lib_chooseImages':
io.c:85: warning: unused parameter 'mode'
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c objects.c -o objects.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -march=nocona -c tools.c -o tools.o
g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o EBImage.so EBImage.o colors.o conversions.o display.o drawable.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_distmap.o filters_magick.o filters_morph.o filters_normalize.o filters_propagate.o filters_thresh.o filters_watershed.o io.o objects.o tools.o -L/usr/local/lib -L/usr/X11R6/lib -L/usr/local/lib -lfreetype -lz -Wl,-framework,CoreServices,-framework,ApplicationServices -lMagick -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread -lWand -lMagick -lWand -F/Library/Frameworks/R.framework/.. -framework R
** R
** inst
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'EBImage'
Formats: text html latex example
EBImage-deprecated text html latex
EBImage-package text html latex
Image.generic.methods text html latex
channel text html latex example
class.Image text html latex example
class.IndexedImage text html latex example
constructors text html latex example
denoising text html latex example
display text html latex example
distmap text html latex example
drawable text html latex example
enhancing text html latex
features-edge text html latex example
features-haralick text html latex example
features-hull text html latex example
features-moments text html latex example
features-zernike text html latex example
getFeatures text html latex example
input-output text html latex example
internals text html latex
matchObjects text html latex
morphology text html latex example
normalize text html latex example
paintObjects text html latex example
propagate text html latex example
rmObjects text html latex example
segmenting text html latex
stackObjects text html latex example
thresholding text html latex example
tile text html latex example
transformations text html latex
watershed text html latex example
** building package indices ...
* DONE (EBImage)
INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --libs-only EBImage_2.2.0.tar.gz'
* Installing to library 'EBImage.buildbin-libdir'
* Installing *source* package 'EBImage' ...
checking for Magick-config... yes
* found ImageMagick version 6.3.3
* found ImageMagick includes in -I/usr/local/include
checking for pkg-config... no
checking for pkgconfig... (cached) no
* pkg-config/pkgconfig not found: compiling without GTK+ support
-----------------------------------------------------
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - ppc
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c EBImage.c -o EBImage.o
EBImage.c: In function 'R_unload_EBImage':
EBImage.c:137: warning: unused parameter 'winDll'
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c colors.c -o colors.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c conversions.c -o conversions.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c display.c -o display.o
display.c: In function 'lib_display':
display.c:44: warning: unused parameter 'caption'
display.c:44: warning: unused parameter 'nogtk'
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c drawable.c -o drawable.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c features_haralick.c -o features_haralick.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c features_hull.c -o features_hull.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c features_moments.c -o features_moments.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c features_zernike.c -o features_zernike.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c filters_distmap.c -o filters_distmap.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c filters_magick.c -o filters_magick.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c filters_morph.c -o filters_morph.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c filters_normalize.c -o filters_normalize.o
g++ -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c filters_propagate.cpp -o filters_propagate.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c filters_thresh.c -o filters_thresh.o
g++ -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c filters_watershed.cpp -o filters_watershed.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c io.c -o io.o
io.c: In function 'lib_chooseImages':
io.c:85: warning: unused parameter 'mode'
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c objects.c -o objects.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -Wall -g -O2 -Wall -W -D_THREAD_SAFE -I/usr/local/include -fPIC -g -O2 -c tools.c -o tools.o
g++ -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o EBImage.so EBImage.o colors.o conversions.o display.o drawable.o features_haralick.o features_hull.o features_moments.o features_zernike.o filters_distmap.o filters_magick.o filters_morph.o filters_normalize.o filters_propagate.o filters_thresh.o filters_watershed.o io.o objects.o tools.o -L/usr/local/lib -L/usr/X11R6/lib -L/usr/local/lib -lfreetype -lz -Wl,-framework,CoreServices,-framework,ApplicationServices -lMagick -ltiff -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lpthread -lm -lpthread -lWand -lMagick -lWand -F/Library/Frameworks/R.framework/.. -framework R
* DONE (EBImage)