beadarraySNP 1.4.0
Jan Oosting
| Snapshot Date: 2008-04-02 12:12:36 -0700 (Wed, 02 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/beadarraySNP | | Last Changed Rev: 27709 / Revision: 30807 | | Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.1-bioc/meat/beadarraySNP.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'beadarraySNP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'beadarraySNP' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'beadarraySNP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating beadarraySNP-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating beadarraySNP-manual.tex ... OK
* checking beadarraySNP-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/beadarraySNP.Rcheck
---------- Making package beadarraySNP ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'beadarraySNP'
Formats: text html latex example chm
CopynumberConversion text html latex example chm
Datasets text html latex chm
GenomicReports text html latex example chm
PolarTransforms text html latex example chm
QCIllumina-class text html latex chm
alterCN text html latex chm
arrayType text html latex chm
backgroundCorrect.SNP text html latex example chm
backgroundEstimate text html latex example chm
calculateLOH text html latex example chm
calculateQCarray text html latex example chm
class.SnpSetIllumina text html latex chm
compareGenotypes text html latex example chm
createCNSummary text html latex chm
getDNAindex text html latex chm
heterozygosity text html latex example chm
heterozygousSNPs text html latex example chm
interactiveCNselect text html latex chm
normalizeBetweenAlleles.SNP text html latex example chm
normalizeLoci.SNP text html latex example chm
normalizeWithinArrays.SNP text html latex example chm
pdfChromosomesSmoothCopyNumber text html latex example chm
pdfQC text html latex chm
plotGoldenGate4OPA text html latex chm
plotQC text html latex example chm
read.SnpSetIllumina text html latex example chm
removeLowQualityProbes text html latex chm
removeLowQualitySamples text html latex example chm
renameOPA text html latex example chm
reportGenotypeSegmentation text html latex chm
reportSamplePanelQC-methods text html latex example chm
segmentate text html latex chm
setRealCN text html latex chm
smoothed.intensity text html latex example chm
standardNormalization text html latex example chm
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "les\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\beadarraySNP.Rcheck\00_pkg_src\beadarraySNP\chm\beadarraySNP.chm
HHC4016: Warning: Cannot open "les\Windows Resource Kits\Tools\;c:\Program Files\Affymetrix\GDAC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package beadarraySNP for lazy loading
Loading required package: tools
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: quantsmooth
Loading required package: quantreg
Loading required package: SparseM
Loading required package: lodplot
Loading required package: grid
adding MD5 sums
* DONE (beadarraySNP)