ChromoViz 1.10.2
Jihoon Kim
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/ChromoViz | | Last Changed Rev: 28381 / Revision: 30966 | | Last Changed Date: 2007-11-01 15:45:34 -0700 (Thu, 01 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | [ WARNINGS ] | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.1-bioc/meat/ChromoViz.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'ChromoViz/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ChromoViz' version '1.10.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ChromoViz' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warnings in file 'R/cViz.addAnnoNodes2SVG.R':
'\:' is an unrecognized escape in a character string
unrecognized escape removed from "xmlns\:xlink"
'\_' is an unrecognized escape in a character string
unrecognized escape removed from "\_"
'\:' is an unrecognized escape in a character string
unrecognized escape removed from "xlink\:href"
'\#' is an unrecognized escape in a character string
unrecognized escape removed from "\#"
'\<' is an unrecognized escape in a character string
'\>' is an unrecognized escape in a character string
unrecognized escapes removed from "\<?xml version=\"1.0\" standalone=\"yes\"?\>"
Warnings in file 'R/cViz.makeChromWrapperHtml.R':
'\;' is an unrecognized escape in a character string
unrecognized escape removed from "<input type=\"button\" value=\"Search\" onClick=\"FindAccNum(\'Chromosome\')\;\"><br><br><br>"
'\_' is an unrecognized escape in a character string
unrecognized escape removed from "\_"
'\;' is an unrecognized escape in a character string
unrecognized escape removed from "\" unchecked onClick=\"MovetoZero(\'Chromosome\', this)\;\">"
Warnings in file 'R/cViz.mergeSVG.R':
'\:' is an unrecognized escape in a character string
unrecognized escape removed from "xmlns\:xlink"
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
cViz: no visible binding for global variable 'begin'
cViz: no visible binding for global variable 'value'
cViz: no visible binding for global variable 'chrom'
cViz: no visible binding for global variable 'svgControl'
cViz.drawFeature: no visible binding for global variable 'track'
cViz.drawFeature: no visible binding for global variable 'chrom'
cViz.drawFeature: no visible binding for global variable 'value'
cViz.loadFiles: no visible binding for global variable 'track'
Found possibly global 'T' or 'F' in the following functions:
cViz.addAnnoNodes2SVG cViz.drawChr cViz.drawFeature cViz.loadFiles
cViz.mergeSVG
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating ChromoViz-Ex.R ... OK
* checking examples ... OK
* creating ChromoViz-manual.tex ... OK
* checking ChromoViz-manual.tex ... OK
WARNING: There was 1 warning, see
/home/biocbuild/bbs-2.1-bioc/meat/ChromoViz.Rcheck/00check.log
for details
* Installing *source* package 'ChromoViz' ...
** R
** data
** help
>>> Building/Updating help pages for package 'ChromoViz'
Formats: text html latex example
cViz text html latex example
cViz.addAnnoNodes2SVG text html latex
cViz.addZeroToTheSingleDigit text html latex
cViz.distinctNames text html latex
cViz.drawChr text html latex
cViz.drawFeature text html latex
cViz.getHeightOfPolylinePoints text html latex
cViz.incPolylineAttrValue text html latex
cViz.incSVGviewBoxValue text html latex
cViz.incSingleAttrValue text html latex
cViz.incTextAttrValue text html latex
cViz.insertNewAttrValue text html latex
cViz.loadFiles text html latex
cViz.makeChromWrapperHtml text html latex
cViz.makeFrameHtml text html latex
cViz.makeHeaderHtml text html latex
cViz.mergeSVG text html latex
exprKnockout text html latex example
exprStemcell text html latex example
humanBand text html latex example
mouseBand text html latex example
svgControl text html latex
** building package indices ...
* DONE (ChromoViz)