Package: SemSim

Version: 1.4.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check SemSim_1.4.0.tar.gz

StartedAt: 2008-04-09 16:57:40 -0700 (Wed, 09 Apr 2008)

EndedAt: 2008-04-09 17:06:59 -0700 (Wed, 09 Apr 2008)

EllapsedTime: 558.3 seconds

RetCode: 0

Status: OK

CheckDir: SemSim.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/SemSim.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'SemSim/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SemSim' version '1.4.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SemSim' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found possibly global 'T' or 'F' in the following function:
  mtermSim
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating SemSim-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating SemSim-manual.tex ... OK
* checking SemSim-manual.tex ... OK

* Installing *source* package 'SemSim' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'SemSim'
     Formats: text html latex example 
  GOCount                           text    html    latex
  Schreiber                         text    html    latex   example
  SemSim-internal                   text    html    latex
  SemSim-package                    text    html    latex
  geneSim                           text    html    latex   example
  mgeneSim                          text    html    latex   example
  mtermSim                          text    html    latex   example
  termSim                           text    html    latex   example
** building package indices ...
* DONE (SemSim)