DESeq 1.12.0
Simon Anders
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/DESeq | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DESeq.buildbin-libdir DESeq_1.12.0.tar.gz'
>>>>>>>
* installing *source* package 'DESeq' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c pval.c -o pval.o
pval.c:64:51: warning: implicit conversion turns floating-point number into integer: 'double' to 'long' [-Wconversion]
step = MAX( step + 1, (long int) step * 1.5 );
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
pval.c:7:35: note: expanded from macro 'MAX'
#define MAX( a, b ) ( a > b ? a : b )
^
pval.c:86:51: warning: implicit conversion turns floating-point number into integer: 'double' to 'long' [-Wconversion]
step = MAX( step + 1, (long int) step * 1.5 );
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
pval.c:7:35: note: expanded from macro 'MAX'
#define MAX( a, b ) ( a > b ? a : b )
^
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
double esttotalperlength = total/2;
^
pval.c:100:50: warning: implicit conversion turns floating-point number into integer: 'double' to 'long' [-Wconversion]
long int kexp = INTEGER(kS)[0] * REAL(muA)[0] / ( REAL(muA)[0] + REAL(muB)[0] );
˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
4 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o DESeq.so pval.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/DESeq.buildbin-libdir/DESeq/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DESeq)
>>>>>>>
>>>>>>> FIXING LINKS FOR DESeq.buildbin-libdir/DESeq/libs//DESeq.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"