BioC 2.12: CHECK report for hypergraph on petty

Package: hypergraph

Version: 1.32.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch hypergraph_1.32.0.tar.gz

StartedAt: 2013-10-08 22:47:41 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 22:48:30 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 49.0 seconds

RetCode: 0

Status:  OK

CheckDir: hypergraph.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/hypergraph.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'hypergraph/DESCRIPTION' ... OK
* this is package 'hypergraph' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'hypergraph' can be installed ... [4s/4s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: kCores.Rd:29: Dropping empty section \seealso
prepare_Rd: vCover.Rd:32: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [2s/2s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/hypergraph.Rcheck/00check.log'
for details.

* installing *source* package 'hypergraph' ...
** R
** inst
** preparing package for lazy loading
Creating a new generic function for 'head' in package 'hypergraph'
Creating a new generic function for 'tail' in package 'hypergraph'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (hypergraph)

name	user	system	elapsed
DirectedHyperedge-class	0.016	0.001	0.017
Hyperedge-class	0.010	0.001	0.010
Hypergraph-class	0.019	0.001	0.019
kCores	0.040	0.001	0.041
l2hel	0.008	0.000	0.009
vCover	0.033	0.001	0.034