Package: CGHnormaliter

Version: 1.0.1

Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD check --no-vignettes CGHnormaliter_1.0.1.tar.gz

StartedAt: 2010-04-03 04:15:15 -0700 (Sat, 03 Apr 2010)

EndedAt: 2010-04-03 04:16:47 -0700 (Sat, 03 Apr 2010)

EllapsedTime: 91.5 seconds

RetCode: 0

Status: OK

CheckDir: CGHnormaliter.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/CGHnormaliter.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CGHnormaliter/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CGHnormaliter' version '1.0.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CGHnormaliter' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'CGHnormaliter' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: impute
Loading required package: DNAcopy
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: CGHbase
Loading required package: marray
Loading required package: limma

Attaching package: 'CGHcall'


	The following object(s) are masked from package:CGHbase :

	 bpend,
	 bpstart,
	 calls,
	 calls<-,
	 chromosomes,
	 copynumber,
	 copynumber<-,
	 probamp,
	 probamp<-,
	 probgain,
	 probgain<-,
	 probloss,
	 probloss<-,
	 probnorm,
	 probnorm<-,
	 segmented,
	 segmented<- 

** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (CGHnormaliter)