Package: altcdfenvs

Version: 2.8.0

Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD INSTALL --build --library=altcdfenvs.buildbin-libdir altcdfenvs_2.8.0.tar.gz

StartedAt: 2010-04-03 07:00:48 -0700 (Sat, 03 Apr 2010)

EndedAt: 2010-04-03 07:01:00 -0700 (Sat, 03 Apr 2010)

EllapsedTime: 12.0 seconds

RetCode: 0

Status: OK

PackageFile: altcdfenvs_2.8.0.zip

PackageFileSize: 390.5 KiB

* installing *source* package 'altcdfenvs' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:Biobase :

	 updateObject 


	The following object(s) are masked from package:base :

	 Map,
	 cbind,
	 mapply,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rbind,
	 rep.int,
	 table 


*** Deprecation warning ***
The matchprobes package is deprecated and will not be supported
anymore starting with Bioconductor 2.4. Please switch to using the
Biostrings package for efficient string manipulations. If you need
to build a probe package, please see the makeProbePackage vignette
in the AnnotationDbi package.

Loading required package: affyio
Loading required package: graph

Attaching package: 'graph'


	The following object(s) are masked from package:Biostrings :

	 complement 


Attaching package: 'hypergraph'


	The following object(s) are masked from package:IRanges :

	 head,
	 tail 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object)
Warning in matchSignature(signature, fdef, where) :
  in the method signature for function "toHypergraph" no definition for class: "CdfEnvAffy"
Creating a new generic function for "plot" in "altcdfenvs"
** help
*** installing help indices
** building package indices ...
** MD5 sums
packaged installation of 'altcdfenvs' as altcdfenvs_2.8.0.zip
* DONE (altcdfenvs)