Package: twilight

Version: 1.22.0

Command: E:\biocbld\bbs-2.5-bioc\R\bin\R.exe CMD check --no-vignettes twilight_1.22.0.tar.gz

StartedAt: 2010-04-03 06:49:30 -0700 (Sat, 03 Apr 2010)

EndedAt: 2010-04-03 06:50:10 -0700 (Sat, 03 Apr 2010)

EllapsedTime: 39.9 seconds

RetCode: 0

Status: OK

CheckDir: twilight.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.5-bioc/meat/twilight.Rcheck'
* using R version 2.10.1 (2009-12-14)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'twilight/DESCRIPTION' ... OK
* this is package 'twilight' version '1.22.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'twilight' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
twilight: no visible global function definition for 'makeCluster'
twilight: no visible global function definition for 'clusterEvalQ'
twilight: no visible binding for '<<-' assignment to
  '.twilight.lambda.xxx'
twilight: no visible binding for '<<-' assignment to
  '.twilight.pval.xxx'
twilight: no visible binding for '<<-' assignment to
  '.twilight.score.xxx'
twilight: no visible global function definition for 'clusterExport'
twilight: no visible global function definition for 'parCapply'
twilight: no visible binding for global variable '.twilight.lambda.xxx'
twilight: no visible binding for global variable '.twilight.pval.xxx'
twilight: no visible binding for global variable '.twilight.score.xxx'
twilight: no visible global function definition for 'stopCluster'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'twilight' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c confidence.line.c -o confidence.line.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c correlation.c -o correlation.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c kstest.c -o kstest.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c sep.c -o sep.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c twosample.perm.c -o twosample.perm.o
gcc -I"e:/biocbld/bbs-2.5-bioc/R/include"        -O3 -Wall  -std=gnu99 -c twosample.single.c -o twosample.single.o
gcc -shared -s -o twilight.dll tmp.def confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o -Le:/biocbld/bbs-2.5-bioc/R/bin -lR
  ... done
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** MD5 sums
* DONE (twilight)