DNAcopy 1.21.0
Venkatraman E. Seshan
| Bioconductor Changelog | | Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DNAcopy | | Last Changed Rev: 42686 / Revision: 43434 | | Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | [ OK ] | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'DNAcopy/DESCRIPTION' ... OK
* preparing 'DNAcopy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package 'DNAcopy' ...
** libs
gfortran -fpic -g -O -Wall -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f: In function 'wtmaxo':
cbsWtstats.f:17: warning: 'tmaxj' may be used uninitialized in this function
cbsWtstats.f:17: warning: 'tmaxi' may be used uninitialized in this function
gfortran -fpic -g -O -Wall -c cbststats.f -o cbststats.o
cbststats.f: In function 'tmaxo':
cbststats.f:11: warning: 'sxmxi' may be used uninitialized in this function
gfortran -fpic -g -O -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -fpic -g -O -Wall -c changepoints.f -o changepoints.o
gfortran -fpic -g -O -Wall -c esegment.f -o esegment.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran -fpic -g -O -Wall -c getbdry.f -o getbdry.o
gfortran -fpic -g -O -Wall -c prune.f -o prune.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c rshared.c -o rshared.o
gfortran -fpic -g -O -Wall -c segmentp.f -o segmentp.o
gfortran -fpic -g -O -Wall -c smoothCNA.f -o smoothCNA.o
gfortran -fpic -g -O -Wall -c tailprobs.f -o tailprobs.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -lm -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
** R
** data
** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (DNAcopy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'DNAcopy_1.21.0.tar.gz'