Rredland 1.13.0
VJ Carey
| Bioconductor Changelog | | Snapshot Date: 2009-12-07 11:32:00 -0800 (Mon, 07 Dec 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rredland | | Last Changed Rev: 42686 / Revision: 43434 | | Last Changed Date: 2009-10-27 16:45:24 -0700 (Tue, 27 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | N O T S U P P O R T E D |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/Rredland.Rcheck'
* using R version 2.11.0 Under development (unstable) (2009-11-30 r50622)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'Rredland/DESCRIPTION' ... OK
* this is package 'Rredland' version '1.13.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rredland' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: cleanXSDT.Rd:14-15: Dropping empty section \value
prepare_Rd: cleanXSDT.Rd:18: Dropping empty section \note
prepare_Rd: cleanXSDT.Rd:16: Dropping empty section \references
prepare_Rd: cleanXSDT.Rd:21: Dropping empty section \seealso
prepare_Rd: cleanXSDT.Rd:23-24: Dropping empty section \examples
prepare_Rd: getProperties.Rd:24-25: Dropping empty section \details
prepare_Rd: getProperties.Rd:26-27: Dropping empty section \value
prepare_Rd: makeRedlURI.Rd:25: Dropping empty section \references
prepare_Rd: readRDF.Rd:25-26: Dropping empty section \details
prepare_Rd: readRDF.Rd:27-28: Dropping empty section \value
prepare_Rd: readRDF.Rd:31: Dropping empty section \note
prepare_Rd: readRDF.Rd:29: Dropping empty section \references
prepare_Rd: readRDF.Rd:34: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package ‘Rredland’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for BerkeleyDB... yes
checking db.h usability... yes
checking db.h presence... yes
checking for db.h... yes
checking whether compiling/linking BerkeleyDB code works... yes
checking BerkeleyDB in /usr... ok
checking for pkg-config... /usr/local/bin/pkg-config
checking for redland-config... /usr/local/bin/redland-config
checking for redland... yes
checking PKG_CFLAGS... -I/usr/local/include
checking PKG_LIBS... -L/usr/local/lib -lrdf -lrasqal -lraptor
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include -I/Library/Frameworks/R.framework/Versions/2.11/Resources/include/i386 -I/usr/include -I/usr/local/include -I/usr/local/include -fPIC -g -O2 -Wall -c Rredl.c -o Rredl.o
Rredl.c: In function ‘get_rdfnode_ref’:
Rredl.c:325: warning: ‘node’ may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rredland.so Rredl.o -L/usr/local/lib -lrdf -lrasqal -lraptor -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** exec
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
* DONE (Rredland)