Package: altcdfenvs

Version: 2.9.0

Command: /Users/biocbuild/BBS/utils/build-universal.sh altcdfenvs_2.9.0.tar.gz /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R altcdfenvs.buildbin-libdir

StartedAt: 2009-12-07 19:34:36 -0800 (Mon, 07 Dec 2009)

EndedAt: 2009-12-07 19:34:49 -0800 (Mon, 07 Dec 2009)

EllapsedTime: 13.0 seconds

RetCode: 0

Status: OK

PackageFile: altcdfenvs_2.9.0.tgz

PackageFileSize: 384.2 KiB

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=altcdfenvs.buildbin-libdir altcdfenvs_2.9.0.tar.gz'

* installing *source* package ‘altcdfenvs’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:Biobase :

	 updateObject 


	The following object(s) are masked from package:base :

	 Map,
	 cbind,
	 mapply,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rbind,
	 rep.int,
	 table 


*** Deprecation warning ***
The matchprobes package is deprecated and will not be supported
anymore starting with Bioconductor 2.4. Please switch to using the
Biostrings package for efficient string manipulations. If you need
to build a probe package, please see the makeProbePackage vignette
in the AnnotationDbi package.

Loading required package: graph

Attaching package: 'graph'


	The following object(s) are masked from package:Biostrings :

	 complement 


Attaching package: 'hypergraph'


	The following object(s) are masked from package:IRanges :

	 head,
	 tail 


	The following object(s) are masked from package:AnnotationDbi :

	 head,
	 tail 


	The following object(s) are masked from package:utils :

	 head,
	 tail 

NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object)
Warning in matchSignature(signature, fdef, where) :
  in the method signature for function "toHypergraph" no definition for class: “CdfEnvAffy”
Creating a new generic function for "plot" in "altcdfenvs"
** help
*** installing help indices
** building package indices ...
* DONE (altcdfenvs)