Package: Category

Version: 2.16.1

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings Category_2.16.1.tar.gz

StartedAt: 2011-03-31 04:55:07 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 04:57:38 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 151.7 seconds

RetCode: 0

Status:  OK

CheckDir: Category.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/Category.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Category/DESCRIPTION’ ... OK
* this is package ‘Category’ version ‘2.16.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Category’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘Category’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Category)

name	user	system	elapsed
ChrBandTree-class	25.541	0.096	25.641
ChrMapHyperGParams-class	0.004	0.000	0.002
ChrMapHyperGResult-class	0.000	0.000	0.001
ChrMapLinearMParams-class	0.000	0.004	0.001
ChrMapLinearMResult-class	0.000	0.000	0.001
DatPkg-class	0.084	0.000	0.084
HyperGResult-accessors	0.872	0.028	1.045
LinearMParams-class	0.000	0.000	0.001
LinearMResult-class	0.000	0.000	0.001
LinearMResultBase-class	0.000	0.000	0.001
MAPAmat	15.181	0.084	15.264
applyByCategory	0.004	0.000	0.003
cateGOryMatrix	0.440	0.012	0.636
cb_parse_band_Hs	0.000	0.000	0.001
cb_parse_band_Mm	0	0	0
findAMstats	0.004	0.000	0.002
getPathNames	0.164	0.004	0.167
gseattperm	3.773	0.076	4.019
makeChrBandGraph	12.964	0.052	13.017
makeEBcontr	0.364	0.004	0.369
probes2MAP	0.264	0.008	0.272
probes2Path	0.100	0.008	0.108
ttperm	0.028	0.000	0.030