Package: Icens

Version: 1.22.0

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Icens_1.22.0.tar.gz

StartedAt: 2011-03-31 06:20:46 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 06:21:39 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 53.5 seconds

RetCode: 0

Status:  OK

CheckDir: Icens.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/Icens.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Icens/DESCRIPTION’ ... OK
* this is package ‘Icens’ version ‘1.22.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Icens’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
VEMICMmac: no visible binding for global variable ‘EMstep’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘testbv.R’
  Comparing ‘testbv.Rout’ to ‘testbv.Rout.save’ ...117c117
<  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.640501e-16
---
>  [6]  1.461001e+00  1.207129e+00  1.000000e+00  4.748624e-01 -2.480201e-16
 OK
* checking PDF version of manual ... OK

* installing *source* package ‘Icens’ ...
** R
** data
** preparing package for lazy loading
Loading required package: splines
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Icens)

name	user	system	elapsed
BVcliques	0.668	0.007	0.682
BVclmat	4.515	0.017	4.589
BVsupport	4.623	0.018	4.722
EM	0.193	0.008	0.217
EMICM	0.200	0.003	0.218
ISDM	12.858	0.047	13.408
MLEintvl	0.072	0.001	0.074
Maclist	0.037	0.000	0.039
Macmat	0.039	0.000	0.041
PGM	0.317	0.006	0.331
Plotboxes	0.094	0.001	0.095
VEM	0.289	0.002	0.290
cmv	0.004	0.001	0.004
cosmesis	0.003	0.001	0.003
hiv	0.007	0.001	0.008
plot.icsurv	0.700	0.007	0.713
pruitt	0.003	0.001	0.003