Package: imageHTS

Version: 1.0.0

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings imageHTS_1.0.0.tar.gz

StartedAt: 2011-03-31 06:41:30 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 06:45:16 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 226.3 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/imageHTS.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘imageHTS/DESCRIPTION’ ... OK
* this is package ‘imageHTS’ version ‘1.0.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘imageHTS’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘imageHTS’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: abind
Xlib:  extension "RANDR" missing on display ":10979.0".
Loading required package: RColorBrewer
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'Biobase'

The following object(s) are masked from 'package:EBImage':

    channel, combine

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Loading required package: grid
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0	0	0
countObjects	21.809	0.208	21.226
extractFeatures	34.186	0.368	31.278
fileHTS	4.593	0.016	8.195
getImageConf	2.372	0.000	2.377
getUnames	4.888	0.008	4.903
getWellFeatures	6.109	0.032	6.156
highlightSegmentation	0	0	0
installCellPicker	3.388	0.004	3.392
parseDCF	0.004	0.004	0.004
parseImageConf	2.284	0.000	2.288
popCellPicker	2.376	0.000	2.379
prw2uname	0.004	0.000	0.005
readLearnTS	0	0	0
segmentATH	0	0	0
segmentWells	13.677	0.024	12.896
summarizeWells	0	0	0
zprime	4.352	0.008	4.362