BioC 2.7: CHECK report for xps on pelham

Package: xps

Version: 1.10.2

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch xps_1.10.2.tar.gz

StartedAt: 2011-03-31 08:18:03 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 08:23:40 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 336.6 seconds

RetCode: 0

Status: OK

CheckDir: xps.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/xps.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘xps/DESCRIPTION’ ... OK
* this is package ‘xps’ version ‘1.10.2’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘xps’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘xps’ ...
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E
checking for gcc... (cached) gcc -arch i386 -std=gnu99
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... (cached) yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... (cached) none needed
found ROOT version 5.27/04 in directory /usr/local/root
** libs
** arch - i386
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c TMLMath.cxx
TMLMath.cxx:1109:1: warning: "xmax" redefined
TMLMath.cxx:1060:1: warning: this is the location of the previous definition
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c TStat.cxx
In file included from TStat.cxx:53:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c StatUtils.cxx
In file included from StatUtils.cxx:58:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
StatUtils.cxx:240: warning: unused parameter ‘df’
StatUtils.cxx:264: warning: unused parameter ‘df’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSBase.cxx
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSUtils.cxx
In file included from XPSUtils.cxx:79:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
XPSUtils.cxx:1324: warning: unused parameter ‘canvasname’
XPSUtils.cxx:1324: warning: unused parameter ‘treename’
XPSUtils.cxx:1324: warning: unused parameter ‘varexp’
XPSUtils.cxx:1324: warning: unused parameter ‘selection’
XPSUtils.cxx:1324: warning: unused parameter ‘opt’
XPSUtils.cxx:1713: warning: unused parameter ‘min’
XPSUtils.cxx:1713: warning: unused parameter ‘max’
XPSUtils.cxx:2108: warning: unused parameter ‘n’
XPSUtils.cxx:2108: warning: unused parameter ‘x’
XPSUtils.cxx:2108: warning: unused parameter ‘y’
XPSUtils.cxx:2108: warning: unused parameter ‘z’
XPSUtils.cxx:2108: warning: unused parameter ‘opt’
XPSUtils.cxx:2616: warning: unused parameter ‘index’
XPSUtils.cxx:3069: warning: unused parameter ‘n’
XPSUtils.cxx:3069: warning: unused parameter ‘colors’
XPSUtils.cxx:3069: warning: unused parameter ‘priority’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSSchemes.cxx
XPSSchemes.cxx:10004: warning: unused parameter ‘index’
XPSSchemes.cxx:10015: warning: unused parameter ‘index’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSDataTypes.cxx
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSProjectHandler.cxx
In file included from XPSProjectHandler.cxx:47:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSData.cxx
In file included from XPSData.h:47,
                 from XPSData.cxx:79:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSData.cxx:79:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSData.cxx:498: warning: unused parameter ‘name’
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1763: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXDAData(std::ifstream&, const Option_t*, const char*, char, Int_t)’:
XPSData.cxx:1954: warning: label ‘cleanup’ defined but not used
XPSData.cxx: In member function ‘virtual Int_t XGeneChipHyb::ReadXMLHeader(std::ifstream&, const char*, char)’:
XPSData.cxx:2476: warning: unused variable ‘fNMasked’
XPSData.cxx:2486: warning: unused variable ‘fNOutlier’
XPSData.cxx:2496: warning: unused variable ‘fNModified’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSProcessing.cxx:68:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSProcessing.cxx:745: warning: unused parameter ‘name’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSHybridizer.cxx
In file included from XPSHybridizer.cxx:63:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:64:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSHybridizer.h:42,
                 from XPSHybridizer.cxx:64:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSHybridizer.cxx:64:
XPSHybridizer.h:176: warning: unused parameter ‘n’
XPSHybridizer.h:176: warning: unused parameter ‘x’
XPSHybridizer.h:176: warning: unused parameter ‘y’
XPSHybridizer.h:176: warning: unused parameter ‘z’
XPSHybridizer.h:176: warning: unused parameter ‘dx’
XPSHybridizer.h:176: warning: unused parameter ‘dy’
XPSHybridizer.h:176: warning: unused parameter ‘idx’
XPSHybridizer.h:176: warning: unused parameter ‘nsub’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.cxx:1663: warning: unused parameter ‘num’
XPSHybridizer.cxx:1776: warning: unused parameter ‘num’
XPSHybridizer.cxx:1959: warning: unused parameter ‘value1’
XPSHybridizer.cxx:1959: warning: unused parameter ‘value2’
XPSHybridizer.cxx:1959: warning: unused parameter ‘num’
XPSHybridizer.cxx:2083: warning: unused parameter ‘num’
XPSHybridizer.cxx:2343: warning: unused parameter ‘msk’
XPSHybridizer.cxx:2387: warning: unused parameter ‘x’
XPSHybridizer.cxx:2387: warning: unused parameter ‘scale’
XPSHybridizer.cxx:2575: warning: unused parameter ‘x’
XPSHybridizer.cxx:2575: warning: unused parameter ‘scale’
XPSHybridizer.cxx:3622: warning: unused parameter ‘msk’
XPSHybridizer.cxx:3682: warning: unused parameter ‘msk’
XPSHybridizer.cxx:4255: warning: unused parameter ‘msk’
XPSHybridizer.cxx: In member function ‘Double_t XDetectionCall::WilcoxTest(Int_t, Double_t*, Double_t)’:
XPSHybridizer.cxx:1857: warning: ‘pval’ may be used uninitialized in this function
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSSelector.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:52:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSSelector.h:42,
                 from XPSSelector.cxx:52:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSSelector.cxx:52:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
XPSSelector.cxx:316: warning: unused parameter ‘max’
XPSSelector.cxx:316: warning: unused parameter ‘showGraph’
XPSSelector.cxx: In member function ‘Double_t XRankSelector::Cutoff(Int_t, const Double_t*, Double_t, Bool_t)’:
XPSSelector.cxx:334: warning: ‘par0’ may be used uninitialized in this function
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSNormalizer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormalizer.h:42,
                 from XPSNormalizer.cxx:63:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSNormalizer.cxx:64:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
XPSNormalizer.cxx:533: warning: unused parameter ‘xout’
XPSNormalizer.cxx:610: warning: unused parameter ‘xout’
XPSNormalizer.cxx:689: warning: unused parameter ‘xout’
XPSNormalizer.cxx:1129: warning: unused parameter ‘n’
XPSNormalizer.cxx:1160: warning: unused parameter ‘n’
XPSNormalizer.cxx:1297: warning: unused parameter ‘x’
XPSNormalizer.cxx:1297: warning: unused parameter ‘msk’
XPSNormalizer.cxx: In member function ‘virtual Int_t XNormalizer::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’:
XPSNormalizer.cxx:240: warning: ‘his2sel’ may be used uninitialized in this function
XPSNormalizer.cxx:239: warning: ‘his2all’ may be used uninitialized in this function
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSPreProcessing.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:90:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSPreProcessing.h:42,
                 from XPSPreProcessing.cxx:90:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSPreProcessing.cxx:91:
XPSHybridizer.h:176: warning: unused parameter ‘n’
XPSHybridizer.h:176: warning: unused parameter ‘x’
XPSHybridizer.h:176: warning: unused parameter ‘y’
XPSHybridizer.h:176: warning: unused parameter ‘z’
XPSHybridizer.h:176: warning: unused parameter ‘dx’
XPSHybridizer.h:176: warning: unused parameter ‘dy’
XPSHybridizer.h:176: warning: unused parameter ‘idx’
XPSHybridizer.h:176: warning: unused parameter ‘nsub’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
In file included from XPSPreProcessing.cxx:92:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
In file included from XPSPreProcessing.cxx:94:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipCall(Int_t, TTree**, Int_t&, TTree**, TFile*)’:
XPSPreProcessing.cxx:2651: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: In member function ‘virtual Int_t XGCProcesSet::DoMultichipExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:3533: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx: At global scope:
XPSPreProcessing.cxx:4867: warning: unused parameter ‘bgrd’
XPSPreProcessing.cxx:4867: warning: unused parameter ‘bgdev’
XPSPreProcessing.cxx:4921: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:4941: warning: unused parameter ‘algorithm’
XPSPreProcessing.cxx:5329: warning: unused parameter ‘nrow’
XPSPreProcessing.cxx: In member function ‘virtual Int_t XExonProcesSet::DoSpliceExpress(Int_t, TTree**, Int_t, TTree**, TFile*)’:
XPSPreProcessing.cxx:6184: warning: operation on ‘numsels’ may be undefined
XPSPreProcessing.cxx:6375: warning: unused variable ‘numatoms’
XPSPreProcessing.cxx:5987: warning: unused variable ‘x’
XPSPreProcessing.cxx:5988: warning: unused variable ‘y’
XPSPreProcessing.cxx:5993: warning: unused variable ‘stepout’
XPSPreProcessing.cxx: In member function ‘virtual TTree* XExonProcesSet::SchemeTree(XAlgorithm*, void*, TLeaf**)’:
XPSPreProcessing.cxx:6938: warning: unused variable ‘scheme_ptr_ptr’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSNormation.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSNormation.h:42,
                 from XPSNormation.cxx:70:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSNormation.cxx:71:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
In file included from XPSNormation.cxx:73:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
XPSNormation.cxx:182: warning: unused parameter ‘infile’
XPSNormation.cxx:988: warning: unused parameter ‘method’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSFilter.cxx
In file included from XPSFilter.h:49,
                 from XPSFilter.cxx:44:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:44:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSFilter.h:52,
                 from XPSFilter.cxx:44:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSFilter.cxx:44:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.cxx:621: warning: unused parameter ‘sepo’
XPSFilter.cxx:1351: warning: unused parameter ‘table’
XPSFilter.cxx:1630: warning: unused parameter ‘infile’
XPSFilter.cxx:1630: warning: unused parameter ‘outfile’
XPSFilter.cxx:1630: warning: unused parameter ‘varlist’
XPSFilter.cxx:1630: warning: unused parameter ‘nrows’
XPSFilter.cxx:1630: warning: unused parameter ‘sepi’
XPSFilter.cxx:1630: warning: unused parameter ‘sepo’
XPSFilter.cxx:1630: warning: unused parameter ‘delim’
XPSFilter.cxx: In member function ‘virtual Int_t XUniFilter::Calculate(TTree*, const char*, TTree*, const char*, Int_t)’:
XPSFilter.cxx:1787: warning: unused variable ‘brchUnit’
XPSFilter.cxx: At global scope:
XPSFilter.cxx:1657: warning: unused parameter ‘leafname’
XPSFilter.cxx:1839: warning: unused parameter ‘outtree’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSAnalyzer.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalyzer.h:45,
                 from XPSAnalyzer.cxx:42:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
XPSAnalyzer.cxx:213: warning: unused parameter ‘type’
XPSAnalyzer.cxx:213: warning: unused parameter ‘options’
XPSAnalyzer.cxx:213: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:213: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:227: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:227: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:227: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:227: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:227: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:227: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:227: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:239: warning: unused parameter ‘n’
XPSAnalyzer.cxx:239: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:239: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:239: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:239: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:239: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:239: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:288: warning: unused parameter ‘type’
XPSAnalyzer.cxx:288: warning: unused parameter ‘options’
XPSAnalyzer.cxx:288: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:288: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:302: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:302: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:302: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:302: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:302: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:302: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:302: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:314: warning: unused parameter ‘n’
XPSAnalyzer.cxx:314: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:314: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:314: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:314: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:314: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:314: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:363: warning: unused parameter ‘type’
XPSAnalyzer.cxx:363: warning: unused parameter ‘options’
XPSAnalyzer.cxx:363: warning: unused parameter ‘npars’
XPSAnalyzer.cxx:363: warning: unused parameter ‘pars’
XPSAnalyzer.cxx:377: warning: unused parameter ‘infile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘outfile’
XPSAnalyzer.cxx:377: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nrows’
XPSAnalyzer.cxx:377: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:377: warning: unused parameter ‘mu’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepi’
XPSAnalyzer.cxx:377: warning: unused parameter ‘sepo’
XPSAnalyzer.cxx:377: warning: unused parameter ‘delim’
XPSAnalyzer.cxx:377: warning: unused parameter ‘linebuf’
XPSAnalyzer.cxx:389: warning: unused parameter ‘n’
XPSAnalyzer.cxx:389: warning: unused parameter ‘gid’
XPSAnalyzer.cxx:389: warning: unused parameter ‘intree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘leafname’
XPSAnalyzer.cxx:389: warning: unused parameter ‘outtree’
XPSAnalyzer.cxx:389: warning: unused parameter ‘varlist’
XPSAnalyzer.cxx:389: warning: unused parameter ‘nperm’
XPSAnalyzer.cxx:389: warning: unused parameter ‘mu’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c XPSAnalysis.cxx
In file included from XPSData.h:47,
                 from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from XPSProcessing.h:46,
                 from XPSAnalysis.h:44,
                 from XPSAnalysis.cxx:63:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from XPSFilter.h:49,
                 from XPSAnalysis.cxx:64:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
In file included from XPSAnalysis.cxx:64:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSAnalysis.cxx:266: warning: unused parameter ‘infile’
XPSAnalysis.cxx:444: warning: unused parameter ‘type’
XPSAnalysis.cxx:964: warning: unused parameter ‘ntree’
XPSAnalysis.cxx:964: warning: unused parameter ‘tree’
XPSAnalysis.cxx:964: warning: unused parameter ‘n’
XPSAnalysis.cxx:964: warning: unused parameter ‘msk’
XPSAnalysis.cxx:1709: warning: unused parameter ‘exten’
XPSAnalysis.cxx:1709: warning: unused parameter ‘n’
XPSAnalysis.cxx:1709: warning: unused parameter ‘names’
XPSAnalysis.cxx:1709: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:1709: warning: unused parameter ‘output’
XPSAnalysis.cxx:1709: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2001: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2001: warning: unused parameter ‘n’
XPSAnalysis.cxx:2001: warning: unused parameter ‘names’
XPSAnalysis.cxx:2001: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2001: warning: unused parameter ‘output’
XPSAnalysis.cxx:2001: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2654: warning: unused parameter ‘n’
XPSAnalysis.cxx:2654: warning: unused parameter ‘tree’
XPSAnalysis.cxx:2791: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2791: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2791: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2819: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2819: warning: unused parameter ‘n’
XPSAnalysis.cxx:2819: warning: unused parameter ‘names’
XPSAnalysis.cxx:2819: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2819: warning: unused parameter ‘output’
XPSAnalysis.cxx:2819: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2867: warning: unused parameter ‘n’
XPSAnalysis.cxx:2867: warning: unused parameter ‘names’
XPSAnalysis.cxx:2867: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2867: warning: unused parameter ‘output’
XPSAnalysis.cxx:2867: warning: unused parameter ‘sep’
XPSAnalysis.cxx:2936: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:2936: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:2936: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2964: warning: unused parameter ‘exten’
XPSAnalysis.cxx:2964: warning: unused parameter ‘n’
XPSAnalysis.cxx:2964: warning: unused parameter ‘names’
XPSAnalysis.cxx:2964: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:2964: warning: unused parameter ‘output’
XPSAnalysis.cxx:2964: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3006: warning: unused parameter ‘n’
XPSAnalysis.cxx:3006: warning: unused parameter ‘names’
XPSAnalysis.cxx:3006: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3006: warning: unused parameter ‘output’
XPSAnalysis.cxx:3006: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3075: warning: unused parameter ‘leafname’
XPSAnalysis.cxx:3075: warning: unused parameter ‘outtree’
XPSAnalysis.cxx:3075: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3103: warning: unused parameter ‘exten’
XPSAnalysis.cxx:3103: warning: unused parameter ‘n’
XPSAnalysis.cxx:3103: warning: unused parameter ‘names’
XPSAnalysis.cxx:3103: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3103: warning: unused parameter ‘output’
XPSAnalysis.cxx:3103: warning: unused parameter ‘sep’
XPSAnalysis.cxx:3145: warning: unused parameter ‘n’
XPSAnalysis.cxx:3145: warning: unused parameter ‘names’
XPSAnalysis.cxx:3145: warning: unused parameter ‘varlist’
XPSAnalysis.cxx:3145: warning: unused parameter ‘output’
XPSAnalysis.cxx:3145: warning: unused parameter ‘sep’
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c rwrapper.cxx
In file included from XPSData.h:47,
                 from rwrapper.cxx:29:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from rwrapper.cxx:29:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
rwrapper.cxx:1541: warning: unused parameter ‘level’
Generating dictionary xpsDict.cxx...
g++ -O2 -pipe -Wall -W -Woverloaded-virtual -D_REENTRANT -pthread -m32 -I/usr/local/root/include -c xpsDict.cxx
In file included from xpsDict.h:35,
                 from xpsDict.cxx:16:
TStat.h:323: warning: unused parameter ‘x’
TStat.h:324: warning: unused parameter ‘x’
TStat.h:325: warning: unused parameter ‘x’
TStat.h:326: warning: unused parameter ‘x’
In file included from xpsDict.h:41,
                 from xpsDict.cxx:16:
XPSProjectHandler.h:84: warning: unused parameter ‘name’
In file included from xpsDict.h:42,
                 from xpsDict.cxx:16:
XPSData.h:678: warning: unused parameter ‘min’
XPSData.h:678: warning: unused parameter ‘max’
XPSData.h:678: warning: unused parameter ‘var2sort’
XPSData.h:678: warning: unused parameter ‘down’
In file included from xpsDict.h:44,
                 from xpsDict.cxx:16:
XPSHybridizer.h:176: warning: unused parameter ‘n’
XPSHybridizer.h:176: warning: unused parameter ‘x’
XPSHybridizer.h:176: warning: unused parameter ‘y’
XPSHybridizer.h:176: warning: unused parameter ‘z’
XPSHybridizer.h:176: warning: unused parameter ‘dx’
XPSHybridizer.h:176: warning: unused parameter ‘dy’
XPSHybridizer.h:176: warning: unused parameter ‘idx’
XPSHybridizer.h:176: warning: unused parameter ‘nsub’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:435: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSHybridizer.h:176: warning: ‘virtual Int_t XExpressor::Calculate(Int_t, Double_t*, Double_t*, Double_t*, Double_t*, Double_t*, Int_t*, Int_t)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
In file included from xpsDict.h:45,
                 from xpsDict.cxx:16:
XPSSelector.h:152: warning: ‘virtual Int_t XProbeSelector::Calculate(Int_t, Double_t*, Double_t*, Int_t*)’ was hidden
XPSSelector.h:209: warning:   by ‘XUnitSelector::Calculate’
In file included from xpsDict.h:49,
                 from xpsDict.cxx:16:
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:118: warning: ‘virtual Int_t XFilter::Calculate(TTree*, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
XPSFilter.h:120: warning: ‘virtual Int_t XFilter::Calculate(Int_t, TTree**, const char*, TTree*, const char*)’ was hidden
XPSBase.h:434: warning:   by ‘XAlgorithm::Calculate’
g++ -dynamiclib -single_module -undefined dynamic_lookup -install_name /Users/biocbuild/bbs-2.7-bioc/meat/xps.Rcheck/00_pkg_src/xps/src/xps.so -O2 -m32 TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/root/lib -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lz -lGui -pthread -Wl,-rpath,/usr/local/root/lib -lm -ldl  -lRIO -lGed -lTreePlayer -lTreeViewer -o  xps.so
installing to /Users/biocbuild/bbs-2.7-bioc/meat/xps.Rcheck/xps/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

Welcome to xps version 1.10.2 
    an R wrapper for XPS - eXpression Profiling System
    (c) Copyright 2001-2010 by Christian Stratowa
    

* DONE (xps)

name	user	system	elapsed
AnalysisTreeSet-class	0.003	0.000	0.003
CallTreeSet-class	0.002	0.000	0.002
DataTreeSet-class	0.003	0.001	0.003
ExprTreeSet-class	0.002	0.000	0.003
Filter-class	0.001	0.000	0.002
FilterTreeSet-class	0.002	0.001	0.003
PreFilter-class	0.097	0.004	0.101
PreFilter-constructor	0.062	0.003	0.065
ProcesSet-class	0.002	0.001	0.003
ProjectInfo-class	0.018	0.001	0.019
ProjectInfo-constructor	0.087	0.004	0.091
SchemeTreeSet-class	0.002	0.001	0.002
TreeSet-class	0.002	0.000	0.002
UniFilter-class	0.027	0.001	0.032
UniFilter-constructor	0.047	0.002	0.049
addData-methods	0.704	0.076	1.892
attachCall-methods	0.547	0.033	0.726
attachExpr-methods	2.201	0.174	2.606
attachInten-methods	0.470	0.109	0.761
attachMask-methods	0.205	0.081	0.369
bgcorrect	1.033	0.231	1.761
boxplot-methods	0.701	0.192	1.018
callFilter-methods	0.036	0.001	0.039
cvFilter-methods	0.018	0.000	0.018
dabg.call	1.860	0.043	1.994
dfw	0.696	0.059	0.789
diffFilter-methods	0.017	0.001	0.037
existsROOTFile	0.001	0.001	0.001
exonLevel	0.001	0.000	0.001
export	0.607	0.119	0.747
export.root	0.592	0.116	0.748
express	2.109	0.163	2.324
exprs-methods	0	0	0
extenPart	0.001	0.000	0.001
farms	0.766	0.064	1.108
fcFilter-methods	0.020	0.001	0.021
firma	0.001	0.001	0.002
firma.expr	0.000	0.000	0.001
firma.score	0	0	0
gapFilter-methods	0.017	0.001	0.018
getChipName	0.005	0.001	0.006
getChipType	0.006	0.001	0.007
getDatatype	0.001	0.000	0.000
getNameType	0.007	0.001	0.008
getNumberTrees	0.006	0.001	0.007
getProbeInfo	0.003	0.001	0.003
getTreeNames	0.014	0.001	0.015
highFilter-methods	0.016	0.001	0.018
hist-methods	0.707	0.198	1.013
image.dev	0.647	0.192	0.916
import.data	0.297	0.051	0.412
import.exon.scheme	0.000	0.001	0.001
import.expr.scheme	0	0	0
import.genome.scheme	0.001	0.001	0.000
ini.call	0.829	0.063	1.388
intensity-methods	0.001	0.000	0.001
isROOTFile	0.001	0.001	0.001
lowFilter-methods	0.016	0.001	0.018
madFilter-methods	0.017	0.001	0.018
mas4	1.032	0.086	1.598
mas5	1.114	0.092	1.435
mas5.call	0.434	0.026	0.843
mboxplot-methods	0.648	0.190	1.038
metaProbesets	0	0	0
namePart	0.001	0.000	0.001
normalize	2.166	0.160	2.721
nuseplot-methods	0.065	0.007	0.127
pm-methods	0.736	0.206	0.998
pmplot-methods	0.639	0.185	1.052
prefilter	0.001	0.001	0.137
presCall-methods	0.000	0.000	0.001
quantileFilter-methods	0.016	0.001	0.017
ratioFilter-methods	0.014	0.001	0.014
rawCELName-methods	0.046	0.003	0.054
rleplot-methods	0.061	0.006	0.067
rma	2.164	0.164	2.504
root.call	0.447	0.035	0.567
root.data	0.223	0.032	0.310
root.density	0.001	0.000	0.000
root.expr	2.132	0.163	2.731
root.graph1D	0.000	0.000	0.001
root.graph2D	0.000	0.001	0.000
root.hist1D	0	0	0
root.hist2D	0.001	0.000	0.000
root.hist3D	0.000	0.000	0.001
root.image	0.001	0.000	0.000
root.merge.data	0.273	0.032	0.698
root.mvaplot	0	0	0
root.profile	0.000	0.001	0.001
root.scheme	0.036	0.002	0.038
summarize	2.185	0.166	3.167
type2Exten	0.000	0.000	0.001
uniTest-methods	0.017	0.000	0.018
unifilter	0.000	0.000	0.001
unitestFilter-methods	0.022	0.001	0.022
validTreetype	0.001	0.001	0.001
varFilter-methods	0.017	0.001	0.017

Summary

Command output