simulatorAPMS 1.25.0
Tony Chiang
| Snapshot Date: 2011-04-20 07:21:46 -0700 (Wed, 20 Apr 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/simulatorAPMS | | Last Changed Rev: 54802 / Revision: 54983 | | Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/simulatorAPMS.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘simulatorAPMS/DESCRIPTION’ ... OK
* this is package ‘simulatorAPMS’ version ‘1.25.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘simulatorAPMS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: APComEX.Rd:25-27: Dropping empty section \source
prepare_Rd: APComEX.Rd:28-30: Dropping empty section \references
prepare_Rd: PPIEX.Rd:22-24: Dropping empty section \source
prepare_Rd: PPIEX.Rd:25-27: Dropping empty section \references
prepare_Rd: TSNMatrix.Rd:17-19: Dropping empty section \details
prepare_Rd: compIndep.Rd:23-25: Dropping empty section \details
prepare_Rd: fullSimEX.Rd:24-26: Dropping empty section \source
prepare_Rd: fullSimEX.Rd:27-29: Dropping empty section \references
prepare_Rd: missedProtEX.Rd:18-20: Dropping empty section \source
prepare_Rd: missedProtEX.Rd:21-23: Dropping empty section \references
prepare_Rd: missedProtHMSPCI.Rd:15-17: Dropping empty section \details
prepare_Rd: missedProtHMSPCI.Rd:18-20: Dropping empty section \source
prepare_Rd: missedProtHMSPCI.Rd:21-23: Dropping empty section \references
prepare_Rd: runSimEX.Rd:20-22: Dropping empty section \source
prepare_Rd: runSimEX.Rd:23-25: Dropping empty section \references
prepare_Rd: simEX.Rd:20-22: Dropping empty section \source
prepare_Rd: simEX.Rd:23-25: Dropping empty section \references
prepare_Rd: vBaits.Rd:15-17: Dropping empty section \details
prepare_Rd: vBaits.Rd:18-20: Dropping empty section \source
prepare_Rd: vBaits.Rd:21-23: Dropping empty section \references
prepare_Rd: vBaitsEX.Rd:16-18: Dropping empty section \source
prepare_Rd: vBaitsEX.Rd:19-21: Dropping empty section \references
prepare_Rd: vDeformEX.Rd:13-15: Dropping empty section \details
prepare_Rd: vDeformEX.Rd:16-18: Dropping empty section \source
prepare_Rd: vDeformEX.Rd:19-21: Dropping empty section \references
prepare_Rd: vDeformedEX.Rd:13-15: Dropping empty section \details
prepare_Rd: vDeformedEX.Rd:16-18: Dropping empty section \source
prepare_Rd: vDeformedEX.Rd:19-21: Dropping empty section \references
prepare_Rd: vStickyEX.Rd:13-15: Dropping empty section \details
prepare_Rd: vStickyEX.Rd:16-18: Dropping empty section \source
prepare_Rd: vStickyEX.Rd:19-21: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package ‘simulatorAPMS’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation("pkgname")'.
Loading required package: DBI
Loading required package: RpsiXML
Loading required package: annotate
Loading required package: graph
Loading required package: RBGL
Loading required package: XML
Attaching package: ‘XML’
The following object(s) are masked from ‘package:graph’:
addNode
Loading required package: hypergraph
Attaching package: ‘hypergraph’
The following object(s) are masked from ‘package:AnnotationDbi’:
head, tail
The following object(s) are masked from ‘package:utils’:
head, tail
Loading required package: apComplex
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘simulatorAPMS.Rnw’
** testing if installed package can be loaded
*** Deprecation warning ***:
The package 'simulatorAPMS' is deprecated and will not be supported after Bioconductor release 2.4. The methods and functions will be ported over to ppiStats within the next two releases.
* DONE (simulatorAPMS)