BioC 3.0: CHECK report for SigCheck on oaxaca

Package: SigCheck

Version: 1.0.2

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch SigCheck_1.0.2.tar.gz

StartedAt: 2015-04-10 03:23:47 -0700 (Fri, 10 Apr 2015)

EndedAt: 2015-04-10 03:28:45 -0700 (Fri, 10 Apr 2015)

EllapsedTime: 298.0 seconds

RetCode: 0

Status:  OK

CheckDir: SigCheck.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch SigCheck_1.0.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.0-bioc/meat/SigCheck.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SigCheck/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SigCheck’ version ‘1.0.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SigCheck’ can be installed ... [15s/18s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [342s/135s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
sigCheck           96.156 11.668  37.151
sigCheckKnown      66.808  6.273  19.243
sigCheckPermuted   42.885  6.809  16.063
sigCheckPlot       37.222  6.976  10.578
sigCheckClassifier 37.848  2.682  36.932
sigCheckRandom     12.118  3.984   6.768
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

* installing *source* package ‘SigCheck’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SigCheck)

name	user	system	elapsed
knownSignatures	0.032	0.002	0.033
nkiResults	0.014	0.002	0.015
sigCheck	96.156	11.668	37.151
sigCheckClassifier	37.848	2.682	36.932
sigCheckKnown	66.808	6.273	19.243
sigCheckPermuted	42.885	6.809	16.063
sigCheckPlot	37.222	6.976	10.578
sigCheckRandom	12.118	3.984	6.768