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BioC 3.0: BUILD BIN report for cisPath on perceval

This page was generated on 2015-04-10 09:57:48 -0700 (Fri, 10 Apr 2015).

Package 157/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cisPath 1.6.4
Likun Wang
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/cisPath
Last Changed Rev: 98454 / Revision: 102249
Last Changed Date: 2015-01-19 00:21:39 -0800 (Mon, 19 Jan 2015)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: cisPath
Version: 1.6.4
Command: rm -rf cisPath.buildbin-libdir && mkdir cisPath.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cisPath_1.6.4.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cisPath.buildbin-libdir
StartedAt: 2015-04-10 08:02:39 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 08:02:53 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 14.4 seconds
RetCode: 0
Status:  OK 
PackageFile: cisPath_1.6.4.tgz
PackageFileSize: 996.3 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf cisPath.buildbin-libdir && mkdir cisPath.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cisPath_1.6.4.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cisPath.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cisPath.buildbin-libdir cisPath_1.6.4.tar.gz'
>>>>>>> 

* installing *source* package ‘cisPath’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c cisPath.cpp -o cisPath.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o cisPath.so cisPath.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/cisPath.buildbin-libdir/cisPath/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cisPath)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cisPath.buildbin-libdir/cisPath/libs//cisPath.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "cisPath.buildbin-libdir/cisPath/libs//cisPath.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "cisPath.buildbin-libdir/cisPath/libs//cisPath.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "cisPath.buildbin-libdir/cisPath/libs//cisPath.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "cisPath.buildbin-libdir/cisPath/libs//cisPath.so"