BioC experimental data: CHECK report for LiebermanAidenHiC2009 on zin2

Package: LiebermanAidenHiC2009

Version: 0.6.0

Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings LiebermanAidenHiC2009_0.6.0.tar.gz

StartedAt: 2015-10-07 10:12:14 -0700 (Wed, 07 Oct 2015)

EndedAt: 2015-10-07 10:13:34 -0700 (Wed, 07 Oct 2015)

EllapsedTime: 79.9 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: LiebermanAidenHiC2009.Rcheck

Warnings: 2

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings LiebermanAidenHiC2009_0.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.1-data-experiment/meat/LiebermanAidenHiC2009.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LiebermanAidenHiC2009/DESCRIPTION’ ... OK
* this is package ‘LiebermanAidenHiC2009’ version ‘0.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LiebermanAidenHiC2009’ can be installed ... [2s/4s] OK
* checking installed package size ... NOTE
  installed size is 10.5Mb
  sub-directories of 1Mb or more:
    data   9.2Mb
    doc    1.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  ‘DNAse1.df’ ‘DNAse2.df’ ‘H3K27me3.df’ ‘H3K36me3.df’ ‘HiC_GM_chr14’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  ChipSeqData.RData     203Kb    119Kb       xz
  HiC_GM_chr14.RData    9.0Mb    6.0Mb       xz
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.1-data-experiment/meat/LiebermanAidenHiC2009.Rcheck/00check.log’
for details.

* installing *source* package ‘LiebermanAidenHiC2009’ ...
** data
** inst
** help
No man pages found in package  ‘LiebermanAidenHiC2009’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (LiebermanAidenHiC2009)