| Back to the "Multiple platform build/check report" |
This page was generated on 2015-10-07 16:21:29 -0700 (Wed, 07 Oct 2015).
| Package 77/241 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| facopy.annot 0.102.0 David Mosen-Ansorena
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK |  | |||||
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | ||||||
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| Package: facopy.annot |
| Version: 0.102.0 |
| Command: rm -rf facopy.annot.buildbin-libdir facopy.annot.Rcheck && mkdir facopy.annot.buildbin-libdir facopy.annot.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=facopy.annot.buildbin-libdir facopy.annot_0.102.0.tar.gz >facopy.annot.Rcheck\00install.out 2>&1 && cp facopy.annot.Rcheck\00install.out facopy.annot-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=facopy.annot.buildbin-libdir --install="check:facopy.annot-install.out" --force-multiarch --no-vignettes --timings facopy.annot_0.102.0.tar.gz |
| StartedAt: 2015-10-07 10:29:58 -0700 (Wed, 07 Oct 2015) |
| EndedAt: 2015-10-07 10:32:06 -0700 (Wed, 07 Oct 2015) |
| EllapsedTime: 127.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: facopy.annot.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### rm -rf facopy.annot.buildbin-libdir facopy.annot.Rcheck && mkdir facopy.annot.buildbin-libdir facopy.annot.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=facopy.annot.buildbin-libdir facopy.annot_0.102.0.tar.gz >facopy.annot.Rcheck\00install.out 2>&1 && cp facopy.annot.Rcheck\00install.out facopy.annot-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=facopy.annot.buildbin-libdir --install="check:facopy.annot-install.out" --force-multiarch --no-vignettes --timings facopy.annot_0.102.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-3.1-data-experiment/meat/facopy.annot.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'facopy.annot/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'facopy.annot' version '0.102.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'facopy.annot' can be installed ... OK
* checking installed package size ... NOTE
installed size is 6.3Mb
sub-directories of 1Mb or more:
data 5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] OK
** running examples for arch 'x64' ... [5s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'E:/biocbld/bbs-3.1-data-experiment/meat/facopy.annot.Rcheck/00check.log'
for details.
facopy.annot.Rcheck/00install.out:
install for i386 * installing *source* package 'facopy.annot' ... ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded install for x64 * installing *source* package 'facopy.annot' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'facopy.annot' as facopy.annot_0.102.0.zip * DONE (facopy.annot)
facopy.annot.Rcheck/examples_i386/facopy.annot-Ex.timings:
| name | user | system | elapsed | |
| hg18_armLimits | 0.01 | 0.00 | 0.01 | |
| hg18_db_gsk_bladder | 0.01 | 0.00 | 0.01 | |
| hg18_db_gsk_blood | 0.02 | 0.02 | 0.03 | |
| hg18_db_gsk_bone | 0.00 | 0.01 | 0.02 | |
| hg18_db_gsk_brain | 0.02 | 0.00 | 0.01 | |
| hg18_db_gsk_breast | 0.02 | 0.02 | 0.03 | |
| hg18_db_gsk_cervix | 0.03 | 0.00 | 0.03 | |
| hg18_db_gsk_cns | 0.01 | 0.01 | 0.03 | |
| hg18_db_gsk_colon | 0.02 | 0.00 | 0.02 | |
| hg18_db_gsk_connective_tissue | 0.03 | 0.00 | 0.03 | |
| hg18_db_gsk_esophagus | 0.00 | 0.02 | 0.02 | |
| hg18_db_gsk_eye | 0.01 | 0.00 | 0.01 | |
| hg18_db_gsk_kidney | 0.02 | 0.01 | 0.03 | |
| hg18_db_gsk_liver | 0.03 | 0.00 | 0.04 | |
| hg18_db_gsk_lung | 0.03 | 0.00 | 0.03 | |
| hg18_db_gsk_muscle | 0.02 | 0.00 | 0.01 | |
| hg18_db_gsk_ovary | 0.01 | 0.02 | 0.03 | |
| hg18_db_gsk_pancreas | 0.02 | 0.00 | 0.02 | |
| hg18_db_gsk_pharynx | 0.01 | 0.00 | 0.02 | |
| hg18_db_gsk_placenta | 0.02 | 0.00 | 0.02 | |
| hg18_db_gsk_prostate | 0.02 | 0.01 | 0.03 | |
| hg18_db_gsk_rectum | 0.00 | 0.02 | 0.01 | |
| hg18_db_gsk_sarcoma | 0.00 | 0.01 | 0.02 | |
| hg18_db_gsk_stomach | 0.02 | 0.00 | 0.02 | |
| hg18_db_gsk_synovium | 0.00 | 0.02 | 0.01 | |
| hg18_db_gsk_thyroid | 0.01 | 0.00 | 0.02 | |
| hg18_db_gsk_uterus | 0.02 | 0.01 | 0.03 | |
| hg18_db_nci60 | 0.01 | 0.02 | 0.03 | |
| hg18_db_tcga_blca | 0.02 | 0.01 | 0.03 | |
| hg18_db_tcga_brca | 0.02 | 0.02 | 0.04 | |
| hg18_db_tcga_cesc | 0.03 | 0.00 | 0.03 | |
| hg18_db_tcga_coad | 0.03 | 0.00 | 0.03 | |
| hg18_db_tcga_gbm | 0.03 | 0.00 | 0.03 | |
| hg18_db_tcga_hnsc | 0.04 | 0.00 | 0.04 | |
| hg18_db_tcga_kirc | 0.01 | 0.02 | 0.03 | |
| hg18_db_tcga_kirp | 0.02 | 0.01 | 0.03 | |
| hg18_db_tcga_lgg | 0.01 | 0.02 | 0.03 | |
| hg18_db_tcga_lihc | 0.02 | 0.01 | 0.03 | |
| hg18_db_tcga_luad | 0.04 | 0.00 | 0.05 | |
| hg18_db_tcga_lusc | 0.04 | 0.00 | 0.03 | |
| hg18_db_tcga_ov | 0.03 | 0.00 | 0.03 | |
| hg18_db_tcga_prad | 0.01 | 0.02 | 0.03 | |
| hg18_db_tcga_read | 0.02 | 0.01 | 0.03 | |
| hg18_db_tcga_stad | 0.01 | 0.02 | 0.03 | |
| hg18_db_tcga_thca | 0.02 | 0.02 | 0.03 | |
| hg18_db_tcga_ucec | 0.02 | 0.01 | 0.04 | |
| hg18_feature_cancergene | 0.00 | 0.02 | 0.01 | |
| hg18_feature_ensembl | 0.14 | 0.01 | 0.16 | |
| hg18_feature_lincRNA | 0.04 | 0.00 | 0.04 | |
| hg18_feature_mirnas | 0.02 | 0.00 | 0.02 | |
| hg18_feature_oncogene | 0.01 | 0.00 | 0.02 | |
| hg18_feature_tumorsupressor | 0.00 | 0.02 | 0.01 | |
| hg19_armLimits | 0.00 | 0.01 | 0.02 | |
| hg19_db_gsk_bladder | 0.02 | 0.00 | 0.01 | |
| hg19_db_gsk_blood | 0.01 | 0.02 | 0.03 | |
| hg19_db_gsk_bone | 0.02 | 0.01 | 0.03 | |
| hg19_db_gsk_brain | 0.02 | 0.00 | 0.02 | |
| hg19_db_gsk_breast | 0.01 | 0.02 | 0.03 | |
| hg19_db_gsk_cervix | 0.02 | 0.02 | 0.03 | |
| hg19_db_gsk_cns | 0.01 | 0.01 | 0.03 | |
| hg19_db_gsk_colon | 0.03 | 0.00 | 0.03 | |
| hg19_db_gsk_connective_tissue | 0.02 | 0.00 | 0.02 | |
| hg19_db_gsk_esophagus | 0.02 | 0.02 | 0.03 | |
| hg19_db_gsk_eye | 0 | 0 | 0 | |
| hg19_db_gsk_kidney | 0.01 | 0.01 | 0.03 | |
| hg19_db_gsk_liver | 0.03 | 0.00 | 0.03 | |
| hg19_db_gsk_lung | 0.03 | 0.00 | 0.04 | |
| hg19_db_gsk_muscle | 0.00 | 0.02 | 0.01 | |
| hg19_db_gsk_ovary | 0.02 | 0.01 | 0.03 | |
| hg19_db_gsk_pancreas | 0.01 | 0.00 | 0.02 | |
| hg19_db_gsk_pharynx | 0.02 | 0.00 | 0.02 | |
| hg19_db_gsk_placenta | 0.01 | 0.00 | 0.01 | |
| hg19_db_gsk_prostate | 0.02 | 0.02 | 0.04 | |
| hg19_db_gsk_rectum | 0.01 | 0.00 | 0.01 | |
| hg19_db_gsk_sarcoma | 0.00 | 0.01 | 0.02 | |
| hg19_db_gsk_stomach | 0.03 | 0.00 | 0.03 | |
| hg19_db_gsk_synovium | 0.00 | 0.02 | 0.01 | |
| hg19_db_gsk_thyroid | 0.02 | 0.00 | 0.02 | |
| hg19_db_gsk_uterus | 0.01 | 0.02 | 0.03 | |
| hg19_db_nci60 | 0.04 | 0.00 | 0.03 | |
| hg19_db_tcga_blca | 0.01 | 0.01 | 0.03 | |
| hg19_db_tcga_brca | 0.03 | 0.02 | 0.05 | |
| hg19_db_tcga_cesc | 0.03 | 0.00 | 0.03 | |
| hg19_db_tcga_coad | 0.04 | 0.00 | 0.03 | |
| hg19_db_tcga_gbm | 0.01 | 0.01 | 0.03 | |
| hg19_db_tcga_hnsc | 0.02 | 0.02 | 0.03 | |
| hg19_db_tcga_kirc | 0.04 | 0.00 | 0.05 | |
| hg19_db_tcga_kirp | 0.03 | 0.00 | 0.03 | |
| hg19_db_tcga_lgg | 0.04 | 0.00 | 0.03 | |
| hg19_db_tcga_lihc | 0.01 | 0.01 | 0.03 | |
| hg19_db_tcga_luad | 0.02 | 0.02 | 0.04 | |
| hg19_db_tcga_lusc | 0.03 | 0.00 | 0.03 | |
| hg19_db_tcga_ov | 0.03 | 0.00 | 0.03 | |
| hg19_db_tcga_prad | 0.02 | 0.02 | 0.04 | |
| hg19_db_tcga_read | 0.02 | 0.01 | 0.03 | |
| hg19_db_tcga_stad | 0.01 | 0.02 | 0.03 | |
| hg19_db_tcga_thca | 0.03 | 0.00 | 0.03 | |
| hg19_db_tcga_ucec | 0.03 | 0.01 | 0.05 | |
| hg19_feature_cancergene | 0.02 | 0.00 | 0.01 | |
| hg19_feature_ensembl | 0.31 | 0.00 | 0.31 | |
| hg19_feature_lincRNA | 0.03 | 0.00 | 0.03 | |
| hg19_feature_mirnas | 0.02 | 0.00 | 0.02 | |
| hg19_feature_oncogene | 0.00 | 0.02 | 0.02 | |
| hg19_feature_tumorsupressor | 0.01 | 0.00 | 0.01 | |
| mm8_armLimits | 0.00 | 0.01 | 0.02 | |
| mm8_feature_ensembl | 0.35 | 0.02 | 0.36 | |
| mm8_feature_mirnas | 0.01 | 0.00 | 0.01 | |
facopy.annot.Rcheck/examples_x64/facopy.annot-Ex.timings:
| name | user | system | elapsed | |
| hg18_armLimits | 0.02 | 0.01 | 0.03 | |
| hg18_db_gsk_bladder | 0.01 | 0.02 | 0.04 | |
| hg18_db_gsk_blood | 0.02 | 0.01 | 0.03 | |
| hg18_db_gsk_bone | 0.00 | 0.02 | 0.01 | |
| hg18_db_gsk_brain | 0.02 | 0.00 | 0.01 | |
| hg18_db_gsk_breast | 0.02 | 0.01 | 0.03 | |
| hg18_db_gsk_cervix | 0.01 | 0.02 | 0.04 | |
| hg18_db_gsk_cns | 0.03 | 0.00 | 0.03 | |
| hg18_db_gsk_colon | 0.03 | 0.00 | 0.03 | |
| hg18_db_gsk_connective_tissue | 0.02 | 0.00 | 0.01 | |
| hg18_db_gsk_esophagus | 0.01 | 0.02 | 0.04 | |
| hg18_db_gsk_eye | 0.02 | 0.00 | 0.01 | |
| hg18_db_gsk_kidney | 0.02 | 0.00 | 0.02 | |
| hg18_db_gsk_liver | 0.01 | 0.01 | 0.03 | |
| hg18_db_gsk_lung | 0.02 | 0.02 | 0.03 | |
| hg18_db_gsk_muscle | 0.01 | 0.01 | 0.03 | |
| hg18_db_gsk_ovary | 0.03 | 0.00 | 0.03 | |
| hg18_db_gsk_pancreas | 0.05 | 0.00 | 0.04 | |
| hg18_db_gsk_pharynx | 0.01 | 0.02 | 0.03 | |
| hg18_db_gsk_placenta | 0.03 | 0.01 | 0.05 | |
| hg18_db_gsk_prostate | 0.02 | 0.02 | 0.03 | |
| hg18_db_gsk_rectum | 0.01 | 0.00 | 0.02 | |
| hg18_db_gsk_sarcoma | 0.00 | 0.01 | 0.01 | |
| hg18_db_gsk_stomach | 0.02 | 0.02 | 0.04 | |
| hg18_db_gsk_synovium | 0.00 | 0.02 | 0.01 | |
| hg18_db_gsk_thyroid | 0.02 | 0.00 | 0.02 | |
| hg18_db_gsk_uterus | 0.01 | 0.01 | 0.03 | |
| hg18_db_nci60 | 0.02 | 0.02 | 0.03 | |
| hg18_db_tcga_blca | 0.01 | 0.01 | 0.03 | |
| hg18_db_tcga_brca | 0.05 | 0.00 | 0.05 | |
| hg18_db_tcga_cesc | 0.06 | 0.00 | 0.06 | |
| hg18_db_tcga_coad | 0.03 | 0.00 | 0.03 | |
| hg18_db_tcga_gbm | 0.02 | 0.02 | 0.03 | |
| hg18_db_tcga_hnsc | 0.01 | 0.01 | 0.03 | |
| hg18_db_tcga_kirc | 0.03 | 0.00 | 0.03 | |
| hg18_db_tcga_kirp | 0.03 | 0.00 | 0.03 | |
| hg18_db_tcga_lgg | 0.02 | 0.02 | 0.03 | |
| hg18_db_tcga_lihc | 0.01 | 0.02 | 0.03 | |
| hg18_db_tcga_luad | 0.02 | 0.01 | 0.03 | |
| hg18_db_tcga_lusc | 0.04 | 0.00 | 0.03 | |
| hg18_db_tcga_ov | 0.03 | 0.00 | 0.03 | |
| hg18_db_tcga_prad | 0.01 | 0.02 | 0.03 | |
| hg18_db_tcga_read | 0.02 | 0.01 | 0.03 | |
| hg18_db_tcga_stad | 0.03 | 0.02 | 0.05 | |
| hg18_db_tcga_thca | 0.03 | 0.00 | 0.03 | |
| hg18_db_tcga_ucec | 0.03 | 0.00 | 0.03 | |
| hg18_feature_cancergene | 0.02 | 0.00 | 0.02 | |
| hg18_feature_ensembl | 0.20 | 0.01 | 0.22 | |
| hg18_feature_lincRNA | 0.02 | 0.02 | 0.03 | |
| hg18_feature_mirnas | 0.00 | 0.01 | 0.01 | |
| hg18_feature_oncogene | 0.00 | 0.02 | 0.02 | |
| hg18_feature_tumorsupressor | 0.00 | 0.02 | 0.02 | |
| hg19_armLimits | 0.00 | 0.01 | 0.01 | |
| hg19_db_gsk_bladder | 0.03 | 0.00 | 0.03 | |
| hg19_db_gsk_blood | 0.03 | 0.00 | 0.03 | |
| hg19_db_gsk_bone | 0.01 | 0.02 | 0.04 | |
| hg19_db_gsk_brain | 0.02 | 0.00 | 0.01 | |
| hg19_db_gsk_breast | 0.05 | 0.00 | 0.05 | |
| hg19_db_gsk_cervix | 0.01 | 0.00 | 0.01 | |
| hg19_db_gsk_cns | 0.02 | 0.01 | 0.03 | |
| hg19_db_gsk_colon | 0.01 | 0.02 | 0.04 | |
| hg19_db_gsk_connective_tissue | 0.02 | 0.01 | 0.03 | |
| hg19_db_gsk_esophagus | 0.03 | 0.00 | 0.03 | |
| hg19_db_gsk_eye | 0 | 0 | 0 | |
| hg19_db_gsk_kidney | 0.02 | 0.00 | 0.02 | |
| hg19_db_gsk_liver | 0.02 | 0.02 | 0.03 | |
| hg19_db_gsk_lung | 0.01 | 0.01 | 0.03 | |
| hg19_db_gsk_muscle | 0.03 | 0.00 | 0.03 | |
| hg19_db_gsk_ovary | 0.02 | 0.02 | 0.03 | |
| hg19_db_gsk_pancreas | 0.01 | 0.00 | 0.02 | |
| hg19_db_gsk_pharynx | 0.02 | 0.02 | 0.03 | |
| hg19_db_gsk_placenta | 0.02 | 0.00 | 0.02 | |
| hg19_db_gsk_prostate | 0.02 | 0.00 | 0.02 | |
| hg19_db_gsk_rectum | 0.01 | 0.01 | 0.03 | |
| hg19_db_gsk_sarcoma | 0.02 | 0.00 | 0.01 | |
| hg19_db_gsk_stomach | 0.01 | 0.00 | 0.02 | |
| hg19_db_gsk_synovium | 0 | 0 | 0 | |
| hg19_db_gsk_thyroid | 0.01 | 0.00 | 0.02 | |
| hg19_db_gsk_uterus | 0.02 | 0.01 | 0.03 | |
| hg19_db_nci60 | 0.03 | 0.00 | 0.03 | |
| hg19_db_tcga_blca | 0.02 | 0.02 | 0.03 | |
| hg19_db_tcga_brca | 0.03 | 0.00 | 0.03 | |
| hg19_db_tcga_cesc | 0.03 | 0.00 | 0.03 | |
| hg19_db_tcga_coad | 0.04 | 0.01 | 0.05 | |
| hg19_db_tcga_gbm | 0.04 | 0.00 | 0.04 | |
| hg19_db_tcga_hnsc | 0.02 | 0.02 | 0.03 | |
| hg19_db_tcga_kirc | 0.05 | 0.00 | 0.05 | |
| hg19_db_tcga_kirp | 0.01 | 0.02 | 0.03 | |
| hg19_db_tcga_lgg | 0.02 | 0.01 | 0.03 | |
| hg19_db_tcga_lihc | 0.03 | 0.02 | 0.05 | |
| hg19_db_tcga_luad | 0.03 | 0.00 | 0.03 | |
| hg19_db_tcga_lusc | 0.05 | 0.00 | 0.05 | |
| hg19_db_tcga_ov | 0.03 | 0.00 | 0.03 | |
| hg19_db_tcga_prad | 0.01 | 0.01 | 0.03 | |
| hg19_db_tcga_read | 0.03 | 0.02 | 0.05 | |
| hg19_db_tcga_stad | 0.03 | 0.00 | 0.03 | |
| hg19_db_tcga_thca | 0.04 | 0.00 | 0.03 | |
| hg19_db_tcga_ucec | 0.03 | 0.00 | 0.03 | |
| hg19_feature_cancergene | 0.00 | 0.01 | 0.02 | |
| hg19_feature_ensembl | 0.45 | 0.02 | 0.46 | |
| hg19_feature_lincRNA | 0.03 | 0.00 | 0.03 | |
| hg19_feature_mirnas | 0.01 | 0.00 | 0.02 | |
| hg19_feature_oncogene | 0.02 | 0.00 | 0.01 | |
| hg19_feature_tumorsupressor | 0.01 | 0.00 | 0.02 | |
| mm8_armLimits | 0 | 0 | 0 | |
| mm8_feature_ensembl | 0.44 | 0.00 | 0.43 | |
| mm8_feature_mirnas | 0.00 | 0.01 | 0.02 | |