Build/check report for BioC 3.10 experimental data - CHECK report for yriMulti on malbec1

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:yriMulti.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings yriMulti_0.16.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/yriMulti.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘yriMulti/DESCRIPTION’ ... OK
* this is package ‘yriMulti’ version ‘0.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘yriMulti’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 179.4Mb
  sub-directories of 1Mb or more:
    data  179.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘geuvPack’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
package 'methods' is used but not declared
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mexGR: no visible global function definition for ‘subjectHits’
mexGR: no visible global function definition for ‘IRanges’
mexGR: no visible global function definition for ‘new’
show,mexGR: no visible global function definition for ‘selectSome’
Undefined global functions or variables:
  IRanges new selectSome subjectHits
Consider adding
  importFrom("methods", "new")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... WARNING
prepare_Rd: pwplot.Rd:7-9: Dropping empty section \description
prepare_Rd: pwplot.Rd:40-42: Dropping empty section \details
checkRd: (5) pwplot.Rd:0-70: Must have a \description
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  ‘demoMAE’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                 old_size new_size compress
  banovichSE.rda  172.2Mb  114.9Mb       xz
  demoMAE.rda       6.8Mb    5.9Mb       xz
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
mexGR      14.860  0.252  15.132
banovichSE  6.772  0.164   6.940
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 WARNINGs, 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.10-data-experiment/meat/yriMulti.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL yriMulti
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘yriMulti’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (yriMulti)

CHECK report for yriMulti on malbec1

Summary

Command output

Installation output

Tests output

Example timings

name	user	system	elapsed
banovichSE	6.772	0.164	6.940
mexGR	14.860	0.252	15.132
pwplot	0.180	0.008	0.187
yriMulti-package	0	0	0