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This page was generated on 2021-05-06 12:35:10 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the GOSemSim package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 763/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GOSemSim 2.16.1 (landing page) Guangchuang Yu
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: GOSemSim |
Version: 2.16.1 |
Command: rm -rf GOSemSim.buildbin-libdir && mkdir GOSemSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOSemSim_2.16.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOSemSim.buildbin-libdir |
StartedAt: 2021-05-06 08:48:47 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 08:49:41 -0400 (Thu, 06 May 2021) |
EllapsedTime: 53.6 seconds |
RetCode: 0 |
Status: OK |
PackageFile: GOSemSim_2.16.1.tgz |
PackageFileSize: 831.5 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GOSemSim.buildbin-libdir && mkdir GOSemSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOSemSim_2.16.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOSemSim.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GOSemSim.buildbin-libdir GOSemSim_2.16.1.tar.gz' >>>>>>> * installing *source* package ‘GOSemSim’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c ICmethod.cpp -o ICmethod.o In file included from ICmethod.cpp:1: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable] SEXP data = Parent::get__(); ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable] SEXP data = Parent::get__(); ^ 1 warning generated. clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GOSemSim.so ICmethod.o RcppExports.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.12-bioc/meat/GOSemSim.buildbin-libdir/00LOCK-GOSemSim/00new/GOSemSim/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GOSemSim) >>>>>>> >>>>>>> FIXING LINKS FOR GOSemSim.buildbin-libdir/GOSemSim/libs/GOSemSim.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "GOSemSim.buildbin-libdir/GOSemSim/libs/GOSemSim.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "GOSemSim.buildbin-libdir/GOSemSim/libs/GOSemSim.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "GOSemSim.buildbin-libdir/GOSemSim/libs/GOSemSim.so"