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This page was generated on 2021-05-06 12:35:36 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the MatrixGenerics package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1011/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MatrixGenerics 1.2.1 (landing page) Peter Hickey
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: MatrixGenerics |
Version: 1.2.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MatrixGenerics.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MatrixGenerics_1.2.1.tar.gz |
StartedAt: 2021-05-06 03:19:11 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 03:19:46 -0400 (Thu, 06 May 2021) |
EllapsedTime: 34.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MatrixGenerics.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MatrixGenerics.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MatrixGenerics_1.2.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/MatrixGenerics.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MatrixGenerics/DESCRIPTION’ ... OK * this is package ‘MatrixGenerics’ version ‘1.2.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MatrixGenerics’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: ‘methods:::fromNextMethod’ ‘methods:::getGenericFromCall’ See the note in ?`:::` about the use of this operator. There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: ‘.load_next_suggested_package_to_search’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.12-bioc/meat/MatrixGenerics.Rcheck/00check.log’ for details.
MatrixGenerics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL MatrixGenerics ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘MatrixGenerics’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixGenerics)
MatrixGenerics.Rcheck/tests/testthat.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(MatrixGenerics) Loading required package: matrixStats Attaching package: 'MatrixGenerics' The following objects are masked from 'package:matrixStats': colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, colCounts, colCummaxs, colCummins, colCumprods, colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, colWeightedMeans, colWeightedMedians, colWeightedSds, colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, rowWeightedMads, rowWeightedMeans, rowWeightedMedians, rowWeightedSds, rowWeightedVars > > test_check("MatrixGenerics") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 310 ] > > proc.time() user system elapsed 1.761 0.131 1.870
MatrixGenerics.Rcheck/MatrixGenerics-Ex.timings
name | user | system | elapsed | |
rowAlls | 0.003 | 0.001 | 0.004 | |
rowAnyNAs | 0.001 | 0.001 | 0.002 | |
rowAnys | 0.002 | 0.001 | 0.003 | |
rowAvgsPerColSet | 0.004 | 0.001 | 0.005 | |
rowCollapse | 0.001 | 0.001 | 0.002 | |
rowCounts | 0.002 | 0.001 | 0.002 | |
rowCummaxs | 0.001 | 0.001 | 0.002 | |
rowCummins | 0.002 | 0.001 | 0.003 | |
rowCumprods | 0.002 | 0.001 | 0.003 | |
rowCumsums | 0.001 | 0.001 | 0.002 | |
rowDiffs | 0.002 | 0.001 | 0.003 | |
rowIQRDiffs | 0.004 | 0.001 | 0.004 | |
rowIQRs | 0.005 | 0.000 | 0.007 | |
rowLogSumExps | 0.002 | 0.001 | 0.002 | |
rowMadDiffs | 0.004 | 0.001 | 0.005 | |
rowMads | 0.002 | 0.001 | 0.003 | |
rowMaxs | 0.001 | 0.001 | 0.002 | |
rowMeans2 | 0.001 | 0.001 | 0.003 | |
rowMedians | 0.002 | 0.001 | 0.003 | |
rowMins | 0.001 | 0.001 | 0.003 | |
rowOrderStats | 0.001 | 0.001 | 0.002 | |
rowProds | 0.002 | 0.001 | 0.002 | |
rowQuantiles | 0.007 | 0.001 | 0.008 | |
rowRanges | 0.001 | 0.001 | 0.002 | |
rowRanks | 0.002 | 0.001 | 0.003 | |
rowSdDiffs | 0.004 | 0.002 | 0.006 | |
rowSds | 0.002 | 0.001 | 0.003 | |
rowSums2 | 0.001 | 0.000 | 0.002 | |
rowTabulates | 0.003 | 0.001 | 0.004 | |
rowVarDiffs | 0.002 | 0.001 | 0.004 | |
rowVars | 0.001 | 0.000 | 0.002 | |
rowWeightedMads | 0.002 | 0.000 | 0.003 | |
rowWeightedMeans | 0.002 | 0.000 | 0.003 | |
rowWeightedMedians | 0.002 | 0.001 | 0.003 | |
rowWeightedSds | 0.003 | 0.001 | 0.004 | |
rowWeightedVars | 0.001 | 0.000 | 0.002 | |