Rurika Oka
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/MutationalPatterns |
| Branch: RELEASE_3_12 |
| Last Commit: 72983a7 |
| Last Changed Date: 2020-11-12 05:21:39 -0400 (Thu, 12 Nov 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:25 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the MutationalPatterns package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1189/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MutationalPatterns 3.0.1 (landing page) Rurika Oka
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MutationalPatterns |
| Version: 3.0.1 |
| Command: rm -rf MutationalPatterns.buildbin-libdir && mkdir MutationalPatterns.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MutationalPatterns.buildbin-libdir MutationalPatterns_3.0.1.tar.gz |
| StartedAt: 2021-05-06 09:36:57 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 09:37:29 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 31.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: MutationalPatterns_3.0.1.zip |
| PackageFileSize: 3.62 MiB |
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### Running command:
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### rm -rf MutationalPatterns.buildbin-libdir && mkdir MutationalPatterns.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MutationalPatterns.buildbin-libdir MutationalPatterns_3.0.1.tar.gz
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install for i386
* installing *source* package 'MutationalPatterns' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MutationalPatterns'
finding HTML links ... done
MutationalPatterns-defunct html
MutationalPatterns-package html
bin_mutation_density html
binomial_test html
calculate_lesion_segregation html
cluster_signatures html
context_potential_damage_analysis html
convert_sigs_to_ref html
cos_sim html
cos_sim_matrix html
count_dbs_contexts html
count_indel_contexts html
count_mbs_contexts html
enrichment_depletion_test html
extract_signatures html
fit_to_signatures html
fit_to_signatures_bootstrapped html
fit_to_signatures_strict html
genomic_distribution html
get_dbs_context html
get_indel_context html
get_known_signatures html
get_mut_type html
lengthen_mut_matrix html
merge_signatures html
mut_192_occurrences html
mut_96_occurrences html
mut_context html
mut_matrix html
mut_matrix_stranded html
mut_strand html
mut_type html
mut_type_occurrences html
mutations_from_vcf html
plot_192_profile html
plot_96_profile html
plot_bootstrapped_contribution html
plot_compare_dbs html
plot_compare_indels html
plot_compare_mbs html
plot_compare_profiles html
plot_contribution html
plot_contribution_heatmap html
plot_correlation_bootstrap html
plot_cosine_heatmap html
plot_dbs_contexts html
plot_enrichment_depletion html
plot_indel_contexts html
plot_lesion_segregation html
plot_main_dbs_contexts html
plot_main_indel_contexts html
plot_mbs_contexts html
plot_original_vs_reconstructed html
plot_profile_heatmap html
plot_profile_region html
plot_rainfall html
plot_river html
plot_signature_strand_bias html
plot_spectrum html
plot_spectrum_region html
plot_strand html
plot_strand_bias html
pool_mut_mat html
read_vcfs_as_granges html
rename_nmf_signatures html
signature_potential_damage_analysis html
split_muts_region html
strand_bias_test html
strand_occurrences html
type_context html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MutationalPatterns' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MutationalPatterns' as MutationalPatterns_3.0.1.zip
* DONE (MutationalPatterns)