| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:37:11 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the TileDBArray package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1859/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TileDBArray 1.0.0 (landing page) Aaron Lun
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
| Package: TileDBArray |
| Version: 1.0.0 |
| Command: rm -rf TileDBArray.buildbin-libdir && mkdir TileDBArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TileDBArray_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TileDBArray.buildbin-libdir |
| StartedAt: 2021-05-06 10:13:29 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 10:14:39 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 70.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: TileDBArray_1.0.0.tgz |
| PackageFileSize: 717.4 KiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf TileDBArray.buildbin-libdir && mkdir TileDBArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TileDBArray_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TileDBArray.buildbin-libdir
###
##############################################################################
##############################################################################
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TileDBArray.buildbin-libdir TileDBArray_1.0.0.tar.gz'
>>>>>>>
* installing *source* package ‘TileDBArray’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
SEXP data = Parent::get__();
^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c remap_indices.cpp -o remap_indices.o
In file included from remap_indices.cpp:1:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
SEXP data = Parent::get__();
^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o TileDBArray.so RcppExports.o remap_indices.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/TileDBArray.buildbin-libdir/00LOCK-TileDBArray/00new/TileDBArray/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TileDBArray)
>>>>>>>
>>>>>>> FIXING LINKS FOR TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so"