Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:34:23 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the bigPint package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 150/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
bigPint 1.6.0 (landing page) Lindsay Rutter
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: bigPint |
Version: 1.6.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:bigPint.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings bigPint_1.6.0.tar.gz |
StartedAt: 2021-05-05 23:36:09 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 23:41:29 -0400 (Wed, 05 May 2021) |
EllapsedTime: 320.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: bigPint.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:bigPint.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings bigPint_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/bigPint.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘bigPint/DESCRIPTION’ ... OK * this is package ‘bigPint’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘bigPint’ can be installed ... OK * checking installed package size ... NOTE installed size is 22.6Mb sub-directories of 1Mb or more: data 11.0Mb help 3.2Mb shiny-dashboards 5.0Mb shiny-examples 3.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plotSM 51.040 0.711 52.222 plotClusters 17.726 0.738 18.577 plotLitre 6.837 0.170 7.051 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.12-bioc/meat/bigPint.Rcheck/00check.log’ for details.
bigPint.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL bigPint ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘bigPint’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigPint)
bigPint.Rcheck/tests/runTests.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("bigPint") RUNIT TEST PROTOCOL -- Wed May 5 23:41:16 2021 *********************************************** Number of test functions: 5 Number of errors: 0 Number of failures: 0 1 Test Suite : bigPint RUnit Tests - 5 test functions, 0 errors, 0 failures Number of test functions: 5 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 9.427 0.453 9.885
bigPint.Rcheck/bigPint-Ex.timings
name | user | system | elapsed | |
convertSEPair | 0.221 | 0.008 | 0.229 | |
convertSESubsetGenes | 0.350 | 0.018 | 0.368 | |
plotClusters | 17.726 | 0.738 | 18.577 | |
plotLitre | 6.837 | 0.170 | 7.051 | |
plotLitreApp | 0.053 | 0.004 | 0.057 | |
plotPCP | 2.282 | 0.139 | 2.429 | |
plotPCPApp | 1.731 | 0.023 | 1.758 | |
plotSM | 51.040 | 0.711 | 52.222 | |
plotSMApp | 0.010 | 0.001 | 0.011 | |
plotVolcano | 1.526 | 0.075 | 1.624 | |
plotVolcanoApp | 0.120 | 0.005 | 0.125 | |