Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:29:56 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the ASICS package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 93/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ASICS 2.6.1 (landing page) Gaƫlle Lefort
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: ASICS |
Version: 2.6.1 |
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASICS.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings ASICS_2.6.1.tar.gz |
StartedAt: 2021-05-06 00:30:30 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 00:53:49 -0400 (Thu, 06 May 2021) |
EllapsedTime: 1398.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ASICS.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASICS.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings ASICS_2.6.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/ASICS.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ASICS/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ASICS' version '2.6.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ASICS' can be installed ... OK * checking installed package size ... NOTE installed size is 5.9Mb sub-directories of 1Mb or more: doc 2.7Mb extdata 1.5Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .shift_spec: no visible binding for global variable 'pure_library' simulate_spectra: no visible binding for global variable 'pure_library' simulate_spectra : <anonymous>: no visible binding for global variable 'pure_library' Undefined global functions or variables: pure_library * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed simulate_spectra 59.60 3.96 63.75 ASICS 40.83 3.83 44.77 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed simulate_spectra 67.56 4.19 72.61 ASICS 50.75 4.08 54.98 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/ASICS.Rcheck/00check.log' for details.
ASICS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/ASICS_2.6.1.tar.gz && rm -rf ASICS.buildbin-libdir && mkdir ASICS.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ASICS.buildbin-libdir ASICS_2.6.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL ASICS_2.6.1.zip && rm ASICS_2.6.1.tar.gz ASICS_2.6.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3271k 100 3271k 0 0 32.7M 0 --:--:-- --:--:-- --:--:-- 33.2M install for i386 * installing *source* package 'ASICS' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ASICS' finding HTML links ... done ASICS html ASICSResults-class html ASICSUsersGuide html AnalysisResults-class html finding level-2 HTML links ... done PureLibrary-class html Spectra-class html accessors-methods html alignSpectra html binning html combineAndSubset-methods html createPureLibrary html createSpectra html formatForAnalysis html importSpectra html importSpectraBruker html kruskalWallis html normaliseSpectra html oplsda html pca html plotAlignment html pure_library html simulate_spectra html summary-methods html visualisation-methods-analyses html visualisation-methods-spectra html ** building package indices ** installing vignettes 'ASICS.Rmd' using 'UTF-8' 'ASICSUsersGuide.Rmd' using 'UTF-8' ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ASICS' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ASICS' as ASICS_2.6.1.zip * DONE (ASICS) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'ASICS' successfully unpacked and MD5 sums checked
ASICS.Rcheck/tests_i386/testthat.Rout R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ASICS) > > test_check("ASICS") Binning | | | 0% | |= | 2% | |=== | 4% | |==== | 6% | |====== | 8% | |======= | 10% | |======== | 12% | |========== | 14% | |=========== | 16% | |============= | 18% | |============== | 20% | |=============== | 22% | |================= | 24% | |================== | 26% | |==================== | 28% | |===================== | 30% | |====================== | 32% | |======================== | 34% | |========================= | 36% | |=========================== | 38% | |============================ | 40% | |============================= | 42% | |=============================== | 44% | |================================ | 46% | |================================== | 48% | |=================================== | 50% | |==================================== | 52% | |====================================== | 54% | |======================================= | 56% | |========================================= | 58% | |========================================== | 60% | |=========================================== | 62% | |============================================= | 64% | |============================================== | 66% | |================================================ | 68% | |================================================= | 70% | |================================================== | 72% | |==================================================== | 74% | |===================================================== | 76% | |======================================================= | 78% | |======================================================== | 80% | |========================================================= | 82% | |=========================================================== | 84% | |============================================================ | 86% | |============================================================== | 88% | |=============================================================== | 90% | |================================================================ | 92% | |================================================================== | 94% | |=================================================================== | 96% | |===================================================================== | 98% | |======================================================================| 100% Normalisation method : CS | | | 0% | |=================================== | 50% | |======================================================================| 100% | | | 0% | |=================================== | 50% | |======================================================================| 100% | | | 0% | |=================================== | 50% | |======================================================================| 100% Import spectra from txt or csv files... Normalisation method : CS Import spectra from fid files... Begin PreprocessingChain Begin ReadFids dim Fid_data: 2 16384 IDs: AG_faq_Beck01 AG_faq_Beck051 non-unique IDs? 0 End ReadFids It lasted 0.02 s user time, 0 s system time and 0.01 s elapsed time. Begin GroupDelayCorrection End GroupDelayCorrection It lasted 0.06 s user time, 0 s system time and 0.07 s elapsed time. Begin SolventSuppression End SolventSuppression It lasted 0.01 s user time, 0 s system time and 0.01 s elapsed time. Begin Apodization End Apodization It lasted 0 s user time, 0 s system time and 0 s elapsed time. Begin ZeroFilling End ZeroFilling It lasted 0.1 s user time, 0 s system time and 0.1 s elapsed time. Begin FourierTransform End FourierTransform It lasted 0 s user time, 0.03 s system time and 0.03 s elapsed time. Begin ZeroOrderPhaseCorrection End ZeroOrderPhaseCorrection It lasted 0.25 s user time, 0.08 s system time and 0.32 s elapsed time. Begin InternalReferencing End InternalReferencing It lasted 0.01 s user time, 0 s system time and 0.02 s elapsed time. Begin WindowSelection End WindowSelection It lasted 0.11 s user time, 0 s system time and 0.11 s elapsed time. End PreprocessingChain It lasted 0.56 s user time, 0.11 s system time and 0.67 s elapsed time. Normalisation method : CS Import spectra from txt or csv files... Normalisation method : CS Normalisation method : CS Alignment... Peak detection | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Finding reference spectrum Compute FFT correlations | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% The reference spectrum is the number 3 : AG_faq_Beck139 Align spectra | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Import spectra from txt or csv files... Normalisation method : CS Binning | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Normalisation method : CS Import spectra from txt or csv files... Normalisation method : CS Remove areas from spectrum and library | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Compute weights | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Remove metabolites that cannot belong to the mixture | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Translate library | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Deform library peaks | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Compute quantifications | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Format global results... Remove areas from spectrum and library | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Compute weights | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Remove metabolites that cannot belong to the mixture | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Translate library | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Deform library peaks | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Compute quantifications | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Format global results... Import spectra from 1r files... | | | 0% | |=================================== | 50% | |======================================================================| 100% Normalisation method : CS Remove areas from spectrum and library | | | 0% | |=================================== | 50% | |======================================================================| 100% Compute weights | | | 0% | |=================================== | 50% | |======================================================================| 100% Remove metabolites that cannot belong to the mixture | | | 0% | |=================================== | 50% | |======================================================================| 100% Translate library Compute shifts for all maximum shift values | | | 0% | |=================================== | 50% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Put the median shift for extreme shift values | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Compute correlations between buckets and quantifications | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Shift all spectra according to the best shift | | | 0% | |=================================== | 50% | |======================================================================| 100% Deform library peaks | | | 0% | |=================================== | 50% | |======================================================================| 100% Compute quantifications | | | 0% | |=================================== | 50% | |======================================================================| 100% Format global results... Remove areas from spectrum and library | | | 0% | |=================================== | 50% | |======================================================================| 100% Compute weights | | | 0% | |=================================== | 50% | |======================================================================| 100% Remove metabolites that cannot belong to the mixture | | | 0% | |=================================== | 50% | |======================================================================| 100% Translate library Compute shifts for all maximum shift values | | | 0% | |=================================== | 50% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Put the median shift for extreme shift values | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Compute correlations between buckets and quantifications | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Shift all spectra according to the best shift | | | 0% | |=================================== | 50% | |======================================================================| 100% Deform library peaks | | | 0% | |=================================== | 50% | |======================================================================| 100% Compute quantifications | | | 0% | |=================================== | 50% | |======================================================================| 100% Format global results... [ FAIL 0 | WARN 6 | SKIP 0 | PASS 23 ] > > proc.time() user system elapsed 497.35 11.78 516.31 |
ASICS.Rcheck/tests_x64/testthat.Rout R version 4.0.5 (2021-03-31) -- "Shake and Throw" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ASICS) > > test_check("ASICS") Binning | | | 0% | |= | 2% | |=== | 4% | |==== | 6% | |====== | 8% | |======= | 10% | |======== | 12% | |========== | 14% | |=========== | 16% | |============= | 18% | |============== | 20% | |=============== | 22% | |================= | 24% | |================== | 26% | |==================== | 28% | |===================== | 30% | |====================== | 32% | |======================== | 34% | |========================= | 36% | |=========================== | 38% | |============================ | 40% | |============================= | 42% | |=============================== | 44% | |================================ | 46% | |================================== | 48% | |=================================== | 50% | |==================================== | 52% | |====================================== | 54% | |======================================= | 56% | |========================================= | 58% | |========================================== | 60% | |=========================================== | 62% | |============================================= | 64% | |============================================== | 66% | |================================================ | 68% | |================================================= | 70% | |================================================== | 72% | |==================================================== | 74% | |===================================================== | 76% | |======================================================= | 78% | |======================================================== | 80% | |========================================================= | 82% | |=========================================================== | 84% | |============================================================ | 86% | |============================================================== | 88% | |=============================================================== | 90% | |================================================================ | 92% | |================================================================== | 94% | |=================================================================== | 96% | |===================================================================== | 98% | |======================================================================| 100% Normalisation method : CS | | | 0% | |=================================== | 50% | |======================================================================| 100% | | | 0% | |=================================== | 50% | |======================================================================| 100% | | | 0% | |=================================== | 50% | |======================================================================| 100% Import spectra from txt or csv files... Normalisation method : CS Import spectra from fid files... Begin PreprocessingChain Begin ReadFids dim Fid_data: 2 16384 IDs: AG_faq_Beck01 AG_faq_Beck051 non-unique IDs? 0 End ReadFids It lasted 0.01 s user time, 0 s system time and 0.01 s elapsed time. Begin GroupDelayCorrection End GroupDelayCorrection It lasted 0.03 s user time, 0 s system time and 0.03 s elapsed time. Begin SolventSuppression End SolventSuppression It lasted 0.02 s user time, 0 s system time and 0.02 s elapsed time. Begin Apodization End Apodization It lasted 0 s user time, 0 s system time and 0 s elapsed time. Begin ZeroFilling End ZeroFilling It lasted 0.03 s user time, 0 s system time and 0.03 s elapsed time. Begin FourierTransform End FourierTransform It lasted 0.02 s user time, 0 s system time and 0.02 s elapsed time. Begin ZeroOrderPhaseCorrection End ZeroOrderPhaseCorrection It lasted 0.15 s user time, 0 s system time and 0.15 s elapsed time. Begin InternalReferencing End InternalReferencing It lasted 0.02 s user time, 0 s system time and 0.02 s elapsed time. Begin WindowSelection End WindowSelection It lasted 0.06 s user time, 0 s system time and 0.06 s elapsed time. End PreprocessingChain It lasted 0.34 s user time, 0 s system time and 0.34 s elapsed time. Normalisation method : CS Import spectra from txt or csv files... Normalisation method : CS Normalisation method : CS Alignment... Peak detection | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Finding reference spectrum Compute FFT correlations | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% The reference spectrum is the number 3 : AG_faq_Beck139 Align spectra | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Import spectra from txt or csv files... Normalisation method : CS Binning | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Normalisation method : CS Import spectra from txt or csv files... Normalisation method : CS Remove areas from spectrum and library | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Compute weights | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Remove metabolites that cannot belong to the mixture | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Translate library | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Deform library peaks | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Compute quantifications | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Format global results... Remove areas from spectrum and library | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Compute weights | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Remove metabolites that cannot belong to the mixture | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Translate library | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Deform library peaks | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Compute quantifications | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100% Format global results... Import spectra from 1r files... | | | 0% | |=================================== | 50% | |======================================================================| 100% Normalisation method : CS Remove areas from spectrum and library | | | 0% | |=================================== | 50% | |======================================================================| 100% Compute weights | | | 0% | |=================================== | 50% | |======================================================================| 100% Remove metabolites that cannot belong to the mixture | | | 0% | |=================================== | 50% | |======================================================================| 100% Translate library Compute shifts for all maximum shift values | | | 0% | |=================================== | 50% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Put the median shift for extreme shift values | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Compute correlations between buckets and quantifications | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Shift all spectra according to the best shift | | | 0% | |=================================== | 50% | |======================================================================| 100% Deform library peaks | | | 0% | |=================================== | 50% | |======================================================================| 100% Compute quantifications | | | 0% | |=================================== | 50% | |======================================================================| 100% Format global results... Remove areas from spectrum and library | | | 0% | |=================================== | 50% | |======================================================================| 100% Compute weights | | | 0% | |=================================== | 50% | |======================================================================| 100% Remove metabolites that cannot belong to the mixture | | | 0% | |=================================== | 50% | |======================================================================| 100% Translate library Compute shifts for all maximum shift values | | | 0% | |=================================== | 50% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Put the median shift for extreme shift values | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Compute correlations between buckets and quantifications | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100% Shift all spectra according to the best shift | | | 0% | |=================================== | 50% | |======================================================================| 100% Deform library peaks | | | 0% | |=================================== | 50% | |======================================================================| 100% Compute quantifications | | | 0% | |=================================== | 50% | |======================================================================| 100% Format global results... [ FAIL 0 | WARN 6 | SKIP 0 | PASS 23 ] > > proc.time() user system elapsed 340.68 5.79 346.46 |
ASICS.Rcheck/examples_i386/ASICS-Ex.timings
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ASICS.Rcheck/examples_x64/ASICS-Ex.timings
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