Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:30:58 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the DMRforPairs package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 495/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DMRforPairs 1.26.0 (landing page) Martin Rijlaarsdam
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: DMRforPairs |
Version: 1.26.0 |
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DMRforPairs.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings DMRforPairs_1.26.0.tar.gz |
StartedAt: 2021-05-06 02:17:22 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 02:26:04 -0400 (Thu, 06 May 2021) |
EllapsedTime: 521.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DMRforPairs.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DMRforPairs.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings DMRforPairs_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/DMRforPairs.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'DMRforPairs/DESCRIPTION' ... OK * this is package 'DMRforPairs' version '1.26.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'DMRforPairs' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE DMRforPairs: no visible global function definition for 'combn' DMRforPairs: no visible global function definition for 'p.adjust' calc_stats: no visible global function definition for 'combn' calc_stats: no visible binding for global variable 'median' calc_stats: no visible global function definition for 'wilcox.test' calc_stats: no visible global function definition for 'kruskal.test' export_data: no visible global function definition for 'write.table' plot_annotate_probes: no visible global function definition for 'rainbow' plot_annotate_probes: no visible global function definition for 'png' plot_annotate_probes: no visible global function definition for 'par' plot_annotate_probes: no visible global function definition for 'lines' plot_annotate_probes: no visible global function definition for 'extendrange' plot_annotate_probes: no visible global function definition for 'dev.off' plot_annotate_probes: no visible global function definition for 'pdf' plot_annotate_probes: no visible global function definition for 'combn' plot_annotate_probes: no visible global function definition for 'legend' plot_annotate_probes: no visible global function definition for 'axis' plot_annotate_probes: no visible global function definition for 'box' plot_annotate_probes: no visible global function definition for 'seqlevels<-' plot_annotate_probes: no visible global function definition for 'Rle' plot_annotate_probes: no visible global function definition for 'IRanges' Undefined global functions or variables: IRanges Rle axis box combn dev.off extendrange kruskal.test legend lines median p.adjust par pdf png rainbow seqlevels<- wilcox.test write.table Consider adding importFrom("grDevices", "dev.off", "extendrange", "pdf", "png", "rainbow") importFrom("graphics", "axis", "box", "legend", "lines", "par") importFrom("stats", "kruskal.test", "median", "p.adjust", "wilcox.test") importFrom("utils", "combn", "write.table") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/DMRforPairs.Rcheck/00check.log' for details.
DMRforPairs.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/DMRforPairs_1.26.0.tar.gz && rm -rf DMRforPairs.buildbin-libdir && mkdir DMRforPairs.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRforPairs.buildbin-libdir DMRforPairs_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL DMRforPairs_1.26.0.zip && rm DMRforPairs_1.26.0.tar.gz DMRforPairs_1.26.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2132k 100 2132k 0 0 48.8M 0 --:--:-- --:--:-- --:--:-- 49.5M install for i386 * installing *source* package 'DMRforPairs' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DMRforPairs' finding HTML links ... done CL.methy html DMRforPairs-package html DMRforPairs html calc_stats html example_output_DMRforPairs html export_data html merge_classes html plot_annotate_custom_region html plot_annotate_gene html plot_annotate_probes html plot_annotate_region html regionfinder html testregion html tune_parameters html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DMRforPairs' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'DMRforPairs' as DMRforPairs_1.26.0.zip * DONE (DMRforPairs) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'DMRforPairs' successfully unpacked and MD5 sums checked
DMRforPairs.Rcheck/examples_i386/DMRforPairs-Ex.timings
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DMRforPairs.Rcheck/examples_x64/DMRforPairs-Ex.timings
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