Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:30:39 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the DegNorm package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 445/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DegNorm 1.0.0 (landing page) Ji-Ping Wang
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: DegNorm |
Version: 1.0.0 |
Command: rm -rf DegNorm.buildbin-libdir && mkdir DegNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DegNorm.buildbin-libdir DegNorm_1.0.0.tar.gz |
StartedAt: 2021-05-06 08:52:56 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 08:54:40 -0400 (Thu, 06 May 2021) |
EllapsedTime: 104.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: DegNorm_1.0.0.zip |
PackageFileSize: 3.755 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DegNorm.buildbin-libdir && mkdir DegNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DegNorm.buildbin-libdir DegNorm_1.0.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'DegNorm' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/IRanges/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/IRanges/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c degnormCPP.cpp -o degnormCPP.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o DegNorm.dll tmp.def RcppExports.o degnormCPP.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/DegNorm.buildbin-libdir/00LOCK-DegNorm/00new/DegNorm/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DegNorm' finding HTML links ... done DegNorm-package html PlotFunctions html coverage_res_chr21 html degnorm html plot_coverage html read_coverage html read_coverage_batch html res_DegNorm_chr21 html summary_CoverageClass html summary_DegNormClass html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DegNorm' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/IRanges/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/S4Vectors/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/IRanges/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c degnormCPP.cpp -o degnormCPP.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o DegNorm.dll tmp.def RcppExports.o degnormCPP.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/DegNorm.buildbin-libdir/DegNorm/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'DegNorm' as DegNorm_1.0.0.zip * DONE (DegNorm)